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Report for CCDS38211.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38211.1 Public Mus musculus 2 Ganc 23 108 98 CCDS HistoryNCBI Gene:76051Re-query CCDS DB by CCDS ID:38211.1Re-query CCDS DB by GeneID:76051See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38211.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000135074.1 ENSMUSP00000116898.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000135074.1Link to Ensembl Protein Viewer:ENSMUSP00000116898.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000135074Re-query CCDS DB by Protein ID:ENSMUSP00000116898
Original member Current member NCBI NM_172672.2 NP_766260.2 Accepted alive Link to Nucleotide Sequence:NM_172672.2Link to Protein Sequence:NP_766260.2Re-query CCDS DB by Nucleotide ID:NM_172672Re-query CCDS DB by Protein ID:NP_766260Link to BLAST:NP_766260.2

Chromosomal Locations for CCDS 38211.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 120405031 120405059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120406266 120406328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120411435 120411543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120419358 120419485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120422025 120422204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120423699 120423744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120427730 120427796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120428801 120428897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120430555 120430735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120430941 120431094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120433622 120433857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120435263 120435389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120436622 120436701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120439300 120439443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120441504 120441600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120444138 120444239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120446299 120446542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120448388 120448452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120450821 120450897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120452593 120452667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120455993 120456106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120457208 120457320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120458043 120458146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120459816 120459925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2742 nt):
ATGGAAGCAGCTGAGAAAGAGGAAATCAGTGTTGAAGATGAAGCAGTGGATAAAACTATTTTCAAAGACT
GTGGCAAGATTGCATTCTACAGGCGGCAGAAACAGCAGCTCACCAAGACTACCACCTACCAGGCTTTGCT
AGGCTCAGTCGACACAGAACAGGACAGCACCAGGTTCCAAATCATCAGTGAAGCAACTAAGATTCCTCTC
GTGGCTGAAGTTTATGGTATAGAGAAAGACATTTTCAGACTTAAGATCAATGAAGAGACTCCACTGAAAC
CAAGGTATGAAGTTCCTGACGTCATCAACAGCAAGCTAGGAACTGTCAGGCTGGTCTGCTCAGGGGACAC
AGGCAGCCTAATACTGACAAATAGAAAAGGAGATCTGAAATGTCACGTCTCAGCAAACCCATTCAAGATC
GATTTGCTGTCGAAGAACGAGGCTGTGATCAGCATCAACTCCCTGGGCCAGTTATACTTTGAGCACCTAC
AGGTTCCTCACAAGCAGAGAGCTACCAAAGGAAATGGGCAAAATACACCAGCTGCCACCTCTCAGGAAAA
TCAAGAGGACCTGGGCCTGTGGGAAGAAAAATTTGGAAAATTTGTGGATGTCAAAGCTAATGGCCCTTCC
TCTGTTGGTTTGGATTTCTCTCTTCATGGATTTGAACATCTCTATGGTATTCCTCAACATGCAGAGTCAC
ATCAACTTAAAAATACCAGAGATGGAGATGCATACCGTCTTTATAATCTGGACGTCTATGGATACCAAGT
GCATGACAAAATGGGCATATATGGTTCAGTGCCTTATCTCCTGGCCCACAAACAGGGCAGGACTGTAGGC
ATTTTCTGGCTGAATGCTTCAGAAACACTCGTGGAGATCAACACAGAGCCAGCAGTTGAGTACACACTGA
CCCAGATGGGCCCAGCAGCTGCCAAACAAAAGGTCAGGTGCCGAACTGATGTGCACTGGATGTCAGAGAG
TGGGATCATTGACGTTTTTCTGCTGACAGGACCTACACCTGCTGACGTCTTCAAACAGTACTCATATATC
ACAGGCACACAAGCCATGCCCCCTCTTTTTTCCTTGGGGTACCACCAGTGTCGCTGGAACTATGAAGATG
AACAGGATGTGAAGGCAGTAGATGCAGGGTTTGATGAGCATGACATTCCATATGATGTCATGTGGCTGGA
CATAGAGCACACGGAGGACAAGAAGTACTTCACCTGGGACAAAAAGAGATTTGCAAACCCCAAAAGGATG
CAAGAGCTGCTCAGGAGCAAAAAACGCAAGCTTGTGGTTATCAGTGACCCCCACATCAAGGTGGATCCTG
ACTACACAGTCTATGCTCAAGCCAAAGAACAGGGCTTCTTTGTGAAGAATCCAGAGGGTGGCGACTTCGA
AGGAGTATGTTGGCCTGGTCTCTCGTCTTACCTGGATTTCACCAACCCCAAGGTCAGAGAGTGGTATTCC
AGCCTTTTTGCTTTTCCTGTTTATCAGGGATCTACGGACATCCTTTTCCTATGGAATGACATGAATGAGC
CCTCAGTCTTCAGAGGGCCTGAGCTAACCATGCACAAGAGTGCTGTTCATTATGGCGACTGGGAACACAG
AGAACTTCACAACATCTACGGATTTTATCAGCAAATGGCTACTGCAGAAGGATTGATACAACGATCTAAG
GGGAAGGAGAGGCCCTTTGTTCTTTCACGTTCCTTCTTTGCCGGATCACAAAAGTATGGTGCAGTGTGGA
CAGGAGACAACAAAGCGGAATGGAGCTATCTGAAAATCTCCATCCCGATGTTACTCACTCTCAGTGTCTC
GGGAATCTCCTTCTGTGGAGCTGATGTGGGTGGCTTCATTGGCAATCCTGAGGCAGAGCTGCTTGTGCGT
TGGTACCAGGCTGGAGCTTACCAGCCCTTCTTCCGAGGCCATGCCACCATGAACACCAAGCGACGAGAAC
CCTGGCTGTTTGGGGAAGAATACACTCAGCTGATCCGGGAAGCCATCAGGCAGCGCTACGCCCTCCTGCC
CTATCTGTATTCTCTGTTCTACCACACGCACGTGTCTTCTCAGCCCGTCATGAGGCCTCTGTGGGTCGAA
TATCCTGATGACTTAGAGACTTTTGCTGTGGAAGATGAATACATGCTGGGAAGCGCTTTATTGGTTCATC
CAGTTACAGACCCACAGACCGCCACGATTGACGTGTTCCTGCCAGGGTCAGATGAGGTCTGGTACGACTC
TAAGACATTTGCATATTGGAAAGGAGGGTGTACTGTGAAGATTCCAGTAACCTTGGATACTATCCCAGTG
TTTCAGCGAGGTGGAAGTGTGGTACCAGTAAAGACCACTGTGGGAACGTCCACTGGCTGGATGGCTGACT
CCCCTTATGAGCTCCGGGTTGCCCTAAGCACTCAGGGTTCTGCTGTGGGAGAGCTGTATCTTGATGACGG
CCATTCATTCCAGTACCTCCACCAGAACCAGTTCTTATACCGCAAGTTCTTATTCTGCTCCAGTGTTCTG
ACCAACAGGTGTGCCAATGAGAAGGGTCATTACCCCAGCAAGTGCATTGTGGAGCAGATCTTGGTCTTAG
GCCTTAAGAAGAAGCCATCTTCTGTGACTACCCACTTGTCTGATGGTAGAGCTCAGCCTGCAGCTTTTAC
ATATTGTGCCGAAACATCTGCCCTGCGTCTGGAGAAGCTGTCTCTGCGCATTGGTGAGGACTGGGAAGTC
CGTGTGGGCTGA

Translation (913 aa):
MEAAEKEEISVEDEAVDKTIFKDCGKIAFYRRQKQQLTKTTTYQALLGSVDTEQDSTRFQIISEATKIPL
VAEVYGIEKDIFRLKINEETPLKPRYEVPDVINSKLGTVRLVCSGDTGSLILTNRKGDLKCHVSANPFKI
DLLSKNEAVISINSLGQLYFEHLQVPHKQRATKGNGQNTPAATSQENQEDLGLWEEKFGKFVDVKANGPS
SVGLDFSLHGFEHLYGIPQHAESHQLKNTRDGDAYRLYNLDVYGYQVHDKMGIYGSVPYLLAHKQGRTVG
IFWLNASETLVEINTEPAVEYTLTQMGPAAAKQKVRCRTDVHWMSESGIIDVFLLTGPTPADVFKQYSYI
TGTQAMPPLFSLGYHQCRWNYEDEQDVKAVDAGFDEHDIPYDVMWLDIEHTEDKKYFTWDKKRFANPKRM
QELLRSKKRKLVVISDPHIKVDPDYTVYAQAKEQGFFVKNPEGGDFEGVCWPGLSSYLDFTNPKVREWYS
SLFAFPVYQGSTDILFLWNDMNEPSVFRGPELTMHKSAVHYGDWEHRELHNIYGFYQQMATAEGLIQRSK
GKERPFVLSRSFFAGSQKYGAVWTGDNKAEWSYLKISIPMLLTLSVSGISFCGADVGGFIGNPEAELLVR
WYQAGAYQPFFRGHATMNTKRREPWLFGEEYTQLIREAIRQRYALLPYLYSLFYHTHVSSQPVMRPLWVE
YPDDLETFAVEDEYMLGSALLVHPVTDPQTATIDVFLPGSDEVWYDSKTFAYWKGGCTVKIPVTLDTIPV
FQRGGSVVPVKTTVGTSTGWMADSPYELRVALSTQGSAVGELYLDDGHSFQYLHQNQFLYRKFLFCSSVL
TNRCANEKGHYPSKCIVEQILVLGLKKKPSSVTTHLSDGRAQPAAFTYCAETSALRLEKLSLRIGEDWEV
RVG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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