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Report for CCDS37185.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37185.2 Public Mus musculus 15 Arid2 23 108 98 CCDS HistoryNCBI Gene:77044Re-query CCDS DB by CCDS ID:37185.2Re-query CCDS DB by GeneID:77044See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 37185.2
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data. This update was done because it was determined that the previous CCDS version represented a partial protein coding region, based on comparison to protein homologs including NP_689854.2. The use of an alternative upstream start codon would result in a protein that is 190 aa longer at the N-terminal.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 37185.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096250.4 ENSMUSP00000093969.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096250.4Link to Ensembl Protein Viewer:ENSMUSP00000093969.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000096250Re-query CCDS DB by Protein ID:ENSMUSP00000093969
Original member Current member NCBI NM_175251.4 NP_780460.3 Accepted alive Link to Nucleotide Sequence:NM_175251.4Link to Protein Sequence:NP_780460.3Re-query CCDS DB by Nucleotide ID:NM_175251Re-query CCDS DB by Protein ID:NP_780460Link to BLAST:NP_780460.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780460.3 1828 E9Q7E2 1828 100% 0 0

Chromosomal Locations for CCDS 37185.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 96287695 96287786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96287894 96287987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96289055 96289152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96349993 96350126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96356693 96356911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96358920 96358987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96361574 96361640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96361733 96361983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96362317 96362413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96362492 96362701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96363595 96363762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96366833 96366914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96368653 96368787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96369356 96369552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96369920 96372762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96378814 96378962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96390876 96391014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96391104 96391189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96392355 96392478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96392573 96392664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96401953 96402094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5487 nt):
ATGGCAAACTCGACGGGGAAGGCGCCTCCGGACGAGCGGAGGAAGGGACTGGCTTTCCTGGACGAGCTGC
GGCAGTTCCACCACAGCAGAGGGTCGCCGTTTAAGAAGATCCCTGCGGTGGGTGGGAAGGAGCTGGATCT
TCACGGGCTCTACACCAGAGTCACTACTTTAGGCGGATTCGCGAAGGTTTCTGAGAAGAATCAGTGGGGA
GAAATTGTTGAAGAGTTCAACTTTCCCAGAAGTTGTTCCAACGCTGCCTTTGCTTTAAAACAGTATTACT
TGCGTTATCTAGAAAAGTACGAGAAAGTTCATCATTTTGGGGAAGATGATGATGAGGTACCACCAGGCAA
TCCAAAGCCACAGCTTCCTATTGGTGCAATCCCATCTTCCTACAATTACCAGCAACACAGCGTGTCAGAT
TATCTACGTCAAAGTTATGGGTTATCTATGGATTTTAATTCGCCAAATGATTATAATAAACTGGTGCTTT
CACTGTTATCTGGACTCCCAAATGAAGTGGACTTCGCTATTAATGTGTGCACTCTCCTATCAAATGAAAG
CAAGCACGTCATGCAGCTTGAGAAGGATCCCAAAATCATCACTTTACTGCTCGCTAATGCGGGGGTGTTC
GATGACACTTTAGGATCATTCTCTTCTGTCTTTGGAGAAGAGTGGCGAGAGAAGACTGATAGAGACTTTG
TTAAGTTTTGGAAAGACATTGTTGATGACAATGAAGTGCGAGATCTCATTTCTGACAGAAACAAGGCTCA
TGAAGATACACCAGGAGAATGGATTTGGGAATCTTTATTTCATCCACCTCGAAAGCTGGGCATTAATGAC
ATCGAAGGCCAGCGGGTTCTGCAGATCGCAGTGATCTTGCGGAACCTCTCCTTTGAGGAGAGCAATGTTA
AGCTCTTGGCAGCTAATCGCACCTGTCTGCGTTTCCTGTTGCTCTCTGCACACAGTCATTTTATTTCATT
AAGGCAGCTAGGCCTGGACACCTTAGGGAATATCGCAGCTGAGCTTTTACTGGACCCTGTGGATTTCAGA
ACCACTCATCTGATGTTTCACACTGTTACAAAATGCCTGATGTCAAGGGATAGGTTTTTAAAGATGAGGG
GCATGGAAATTTTGGGAAATCTCTGCAAAGCAGAGGATAACGGTGTTTTGATTTGTGAATATGTGGATCA
AGATTCCTATAGAGAGATAATTTGTCACCTCACTCTGCCCGATGTGCTGCTGGTGACCTCAACCCTGGAG
GTGCTGTACATGCTCACTGAAATGGGGGACGTGGCCTGCACAAAGATCGCGAAAGTGGAGAAGAGCATAG
ACGTGCTGGTGTGTCTGGTCTCTATGGACGCTCAGATGTTTGGACCTGACGCACTTGCTGCCGTGAAGCT
CATTGAGCATCCGAGCTCCAGTCACCAAGTGTTATCAGAGATTAGGCCGCAAGCCATAGAGCAGGTCCAA
ACCCAGACCCACATAGCCTCCGGTCCAGCTTCCAGAGCAGTTGTAGCACAGCATGCTGCCCCCCCTCCAG
GAATCGTGGAAATAGACAGTGAGAAGTTCGCTTGTCAGTGGCTAAATGCTCATTTTGAAGTAAATCCAGA
CTGTTCCGTCTCTCGGGCAGAAATGTATTCAGAGTACCTCTCAACTTGCAGTAAATTAGCTCGCGGTGGC
ATCCTCACATCAACTGGGTTTTATAAGTGTCTTAGAACAGTTTTTCCAAATCATACAGTGAAGAGGGTAG
AAGATTCCACTAGCAGTGGGCAGGCGCATATCCATGTCATAGGAGTGAAGCGGCGGGCTCTCCCGCTCCC
CATCCAGATGTACTATCAGCAGCAGCCAATTTCCACTCCTGTTGTCCGTGTTGATGCTGTTGCTGATCTA
TCTCCAACTCCTTCACCTGCAGGAATCCCTCATGGACCACAGGCTGCAGGGAATCATTTTCAGAGGACTC
CTGTCACCAATCAATCTTCAAATTTGACTGCAACACAAATGTCTTTTCCGGTACAAGGCATTCATACTGT
GGCACAGACTGTTTCCAGAATTCCACCAAATCCTTCAGTTCATACCCACCAGCAACAAAATTCTCCAGTA
ACTGTCATTCAGAATAAAGCTCCAATTCCTTGTGAAGTCGTTAAGGCAACAGTAATCCAGAACTCTGTGC
CCCAGACGGCAGTTCCTGTGAGTATCTCTGTTGGAGGAGCACCTGCACAGAATTCTGTGGGTCAGAACCA
TAGTGCAGGGCCACAGCCTGTTACAGTTGTAAATTCTCAGACATTACTTCACCATCCTTCTGTGATGCCA
CAGCCATCTCCACTACACACAGTGGTGCCCGGACAGGTCCCTTCAGGCACTCCTGTCACAGTAATCCAGC
AGACTGTACCGCAGAGTCGTATGTTTGGACGAGTACAGAGCATACCAGCGTGTACATCTACCGTCTCACA
GGGTCAGCAGTTAATCACCACATCACCACAGCCTATGCACACTTCATCTCAACAGACAGCAGCTGGTAGC
CAGCCACAAGACACTGTTATCATAGCACCCCCACAGTACGTAACAACTTCTGCATCCAATATCGTCTCAG
CGACTTCAGTACAGAATTTCCAGGTAGCTACAGGACAGGTGGTTACCATAGCTGGTGTCCCGAGCCCACA
GCCCTCCAGGGTAGGATTCCAGAACATTGCGCCCAAGCCACTTCCTTCTCAGCAAGTTTCACCATCAGTG
GTCCAGCAGCCTATTCAACAACCACAGCAGCCTGCTCAGCAGAGTGTAGTGATTGTGAGCCAGCCAGCAC
AGCAAGGCCAGGCGTACGCACCAGCCATTCACCAGATCGTTCTCGCTAACCCGGCAGCTCTCCCTGCCGG
TCAGACGGTTCAGCTAACTGGACAACCAAACATAACTCCATCGTCATCACCATCACCTGTCCCGCCTACT
AATAACCAAGTCCCTACTGCCATGTCATCTTCTTCCACCCTTCAGTCACAGGGACCCCCTCCTACTGTCA
GTCAGATGCTCTCTGTGAAGAGGCAGCAGCAGCAGCAGCACTCACCAGCAGCGCCAGCACAGCAGGTCCA
GGTCCAGGTTCAGCAGCCGCAGCAGGTCCAGGTGCAAGTTCAGCCGCAGCAACCGAGTGCTGGGGTCGGT
CAGCCTGCTCCCAACGAGTCTAGTCTCATCAAGCAGCTGCTGCTGCCAAAGCGGGGCCCTTCAACCCCAG
GGGGCAAGCTTATCCTCCCAGCCCCTCAGATTCCTCCCCCTAACAATGCAAGAGCTCCTAGCCCTCAGGT
GGTCTATCAGGTGGCCAATAACCAAGCAGCTGGTTTTGGAGTGCAGGGGCAAACTCCGGCTCAGCAGCTA
TTGGTTGGGCAGCAAAATGTTCAGTTGGTCCAAAGTGCAATGCCACCCGCAGGGGGAGTGCAAACCGTGC
CCATTTCGAACTTACAAATATTGCCGGGTCCGCTGATCTCAAACAGCCCAGCAACCATTTTCCAAGGGAC
TTCTGGCAACCAGGTAACTATAACAGTTGTGCCAAATACCAGTTTTGCAACTGCGACTGTGAGTCAGGGA
AACGCTGCTCAGCTCATTGCGCCAGCCGGTCTTAGCATGAGCGGAGCGCAGGCAAGCGCTGGACTTCAGG
TGCAGACGCTTCCAGCCGGACAATCAGCGTGTACCACTGCTCCCCTCCCGTTCAAAGGCGACAAGATCAT
TTGCCAAAAGGAGGAGGAGGCAAAGGAAGCAACAGGTCTACATGTTCATGAACGGAAGATTGAGGTCATG
GAGAATCCTTCCTGTCGGCGAGGAACCACAAACACCAGCAACGGGGATACAAGTGAGAGTGAACTCCAGG
TGGGAAGTCTTTTAAATGGGAGAAAGTATAGTGACTCAAGTCTACCTCCTTCAAACTCAGGGAAACTTCA
GAGTGAGACGAGCCAGTGCTCACTAATCAGCAATGGGCCATCGTTGGAACTAGGTGAGAATGGAGCGCCT
GGAAAACAGAACTCAGAACCAGTAGACATGCAGGATGTCAAAGGTGATCTGAAAAAAGCCCTCGTCAATG
GAATCTGTGATTTTGATAAAGGAGATGGTTCTCATTTAAGCAAAAACATTCCAAATCACAAAACTTCTAA
TCATGTAGGAAATGGTGAGATATCTCCAGTAGAACCACAAGGGACTTCGGGTGCCACTCAGCAAGATACT
GCCAAAGGTGACCAACTAGAAAGAGTTTCTAATGGACCTGTGTTAACTCTGGGTGGGTCACCGTCCACAA
GCAGTATGCAAGAAGCCCCGAGTGTGGCGACACCGCCGTTGAGTGGTACTGACCTGCCTAACGGACCTCT
AGCTTCAAGTTTGAATTCAGATGTGCCTCAGCAACGCCCAAGTGTAGTTGTCTCACCACATTCTACAGCC
CCTGTCATACAGGGGCATCAAGTCATAGCAGTTCCCCACTCAGGACCTAGAGTGACCCCTTCTGCTCTAT
CATCTGATGCTCGGTCTACAAACGGCACAGCCGAGTGCAAAACTGTAAAGAGGCCGGCAGAGGATAATGA
TAGGGACACTGTCCCGGGAATCCCAAATAAAGTAGGGGTTAGAATTGTTACAATCAGCGACCCCAACAAT
GCTGGCTGCAGTGCAACCATGGTTGCGGTCCCAGCTGGAGCGGACCCAAGCACTGTAGCGAAAGTAGCAA
TAGAAAGTGCTGCTCAGCAAAAGCAGCAGCATCCACCGACCTACATGCAGAGTGTGGCCCCACAGAACAC
TCCTATGCCACCTTCACCAGCTGTACAAGTGCAGGGCCAGCCTAGCAGTTCTCAGCCTTCTCCAGTCAGT
GCGTCCAGTCAGCATGCAGATCCAGTGAGAAAACCTGGGCAGAACTTCATGTGTCTGTGGCAGTCTTGTA
AAAAGTGGTTTCAGACTCCCTCACAAGTGTTCTATCATGCAGCTACTGAACATGGAGGAAAAGATGTGTA
TCCGGGGCAGTGTCTTTGGGAAGGCTGTGAGCCTTTCCAACGGCAGAGGTTCTCTTTCATTACCCACTTA
CAGGATAAGCACTGTTCAAAGGATGCCCTGCTTGCAGGATTAAAGCAAGATGAACCAGGACAAGTGGCAA
ATCAAAAATCTTCTACCAAGCAGCCCACCGTGGGGGGCACAGGCTCTGCGCCCAGAGCCCAGAAGGCCAT
TGCAAGCCACCCCAGTGCTGCACTCATGGCTCTGCGGAGAGGCTCAAGGAACCTCGTCTTCCGGGACTTC
ACAGATGAAAAAGAGGGACCAATAACTAAACACATCCGACTAACAGCTGCCTTAATATTAAAAAATATTG
GTAAATACTCAGAGTGTGGGCGCAGATTGTTAAAGAGACATGAAAACAACTTATCAGTGCTCGCCATTAG
TAACATGGAAGCTTCCTCTACCCTTGCCAAATGCCTTTATGAACTTAATTTTACAGTTCAGAGTAAAGAA
CAAGAAAAAGACTCAGAAATGCTGTAG

Translation (1828 aa):
MANSTGKAPPDERRKGLAFLDELRQFHHSRGSPFKKIPAVGGKELDLHGLYTRVTTLGGFAKVSEKNQWG
EIVEEFNFPRSCSNAAFALKQYYLRYLEKYEKVHHFGEDDDEVPPGNPKPQLPIGAIPSSYNYQQHSVSD
YLRQSYGLSMDFNSPNDYNKLVLSLLSGLPNEVDFAINVCTLLSNESKHVMQLEKDPKIITLLLANAGVF
DDTLGSFSSVFGEEWREKTDRDFVKFWKDIVDDNEVRDLISDRNKAHEDTPGEWIWESLFHPPRKLGIND
IEGQRVLQIAVILRNLSFEESNVKLLAANRTCLRFLLLSAHSHFISLRQLGLDTLGNIAAELLLDPVDFR
TTHLMFHTVTKCLMSRDRFLKMRGMEILGNLCKAEDNGVLICEYVDQDSYREIICHLTLPDVLLVTSTLE
VLYMLTEMGDVACTKIAKVEKSIDVLVCLVSMDAQMFGPDALAAVKLIEHPSSSHQVLSEIRPQAIEQVQ
TQTHIASGPASRAVVAQHAAPPPGIVEIDSEKFACQWLNAHFEVNPDCSVSRAEMYSEYLSTCSKLARGG
ILTSTGFYKCLRTVFPNHTVKRVEDSTSSGQAHIHVIGVKRRALPLPIQMYYQQQPISTPVVRVDAVADL
SPTPSPAGIPHGPQAAGNHFQRTPVTNQSSNLTATQMSFPVQGIHTVAQTVSRIPPNPSVHTHQQQNSPV
TVIQNKAPIPCEVVKATVIQNSVPQTAVPVSISVGGAPAQNSVGQNHSAGPQPVTVVNSQTLLHHPSVMP
QPSPLHTVVPGQVPSGTPVTVIQQTVPQSRMFGRVQSIPACTSTVSQGQQLITTSPQPMHTSSQQTAAGS
QPQDTVIIAPPQYVTTSASNIVSATSVQNFQVATGQVVTIAGVPSPQPSRVGFQNIAPKPLPSQQVSPSV
VQQPIQQPQQPAQQSVVIVSQPAQQGQAYAPAIHQIVLANPAALPAGQTVQLTGQPNITPSSSPSPVPPT
NNQVPTAMSSSSTLQSQGPPPTVSQMLSVKRQQQQQHSPAAPAQQVQVQVQQPQQVQVQVQPQQPSAGVG
QPAPNESSLIKQLLLPKRGPSTPGGKLILPAPQIPPPNNARAPSPQVVYQVANNQAAGFGVQGQTPAQQL
LVGQQNVQLVQSAMPPAGGVQTVPISNLQILPGPLISNSPATIFQGTSGNQVTITVVPNTSFATATVSQG
NAAQLIAPAGLSMSGAQASAGLQVQTLPAGQSACTTAPLPFKGDKIICQKEEEAKEATGLHVHERKIEVM
ENPSCRRGTTNTSNGDTSESELQVGSLLNGRKYSDSSLPPSNSGKLQSETSQCSLISNGPSLELGENGAP
GKQNSEPVDMQDVKGDLKKALVNGICDFDKGDGSHLSKNIPNHKTSNHVGNGEISPVEPQGTSGATQQDT
AKGDQLERVSNGPVLTLGGSPSTSSMQEAPSVATPPLSGTDLPNGPLASSLNSDVPQQRPSVVVSPHSTA
PVIQGHQVIAVPHSGPRVTPSALSSDARSTNGTAECKTVKRPAEDNDRDTVPGIPNKVGVRIVTISDPNN
AGCSATMVAVPAGADPSTVAKVAIESAAQQKQQHPPTYMQSVAPQNTPMPPSPAVQVQGQPSSSQPSPVS
ASSQHADPVRKPGQNFMCLWQSCKKWFQTPSQVFYHAATEHGGKDVYPGQCLWEGCEPFQRQRFSFITHL
QDKHCSKDALLAGLKQDEPGQVANQKSSTKQPTVGGTGSAPRAQKAIASHPSAALMALRRGSRNLVFRDF
TDEKEGPITKHIRLTAALILKNIGKYSECGRRLLKRHENNLSVLAISNMEASSTLAKCLYELNFTVQSKE
QEKDSEML


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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