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Report for CCDS35579.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35579.1 Public Mus musculus 1 Ppil3 23 108 98 CCDS HistoryNCBI Gene:70225Re-query CCDS DB by CCDS ID:35579.1Re-query CCDS DB by GeneID:70225See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35579.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081677.11 ENSMUSP00000080378.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081677.11Link to Ensembl Protein Viewer:ENSMUSP00000080378.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000081677Re-query CCDS DB by Protein ID:ENSMUSP00000080378
Original member Current member EBI ENSMUST00000114348.7 ENSMUSP00000109988.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114348.7Link to Ensembl Protein Viewer:ENSMUSP00000109988.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114348Re-query CCDS DB by Protein ID:ENSMUSP00000109988
Original member Current member EBI ENSMUST00000117069.7 ENSMUSP00000112947.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117069.7Link to Ensembl Protein Viewer:ENSMUSP00000112947.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117069Re-query CCDS DB by Protein ID:ENSMUSP00000112947
Original member Current member NCBI NM_001285826.1 NP_001272755.1 Accepted alive Link to Nucleotide Sequence:NM_001285826.1Link to Protein Sequence:NP_001272755.1Re-query CCDS DB by Nucleotide ID:NM_001285826Re-query CCDS DB by Protein ID:NP_001272755Link to BLAST:NP_001272755.1
Original member Current member NCBI NM_001285827.1 NP_001272756.1 Accepted alive Link to Nucleotide Sequence:NM_001285827.1Link to Protein Sequence:NP_001272756.1Re-query CCDS DB by Nucleotide ID:NM_001285827Re-query CCDS DB by Protein ID:NP_001272756Link to BLAST:NP_001272756.1
Original member Current member NCBI NM_027351.3 NP_081627.1 Accepted alive Link to Nucleotide Sequence:NM_027351.3Link to Protein Sequence:NP_081627.1Re-query CCDS DB by Nucleotide ID:NM_027351Re-query CCDS DB by Protein ID:NP_081627Link to BLAST:NP_081627.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272755.1 161 Q9D6L8-1 161 100% 0 0
NP_001272756.1 161 Q9D6L8-1 161 100% 0 0
NP_081627.1 161 Q9D6L8-1 161 100% 0 0

Chromosomal Locations for CCDS 35579.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 58431204 58431330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58434331 58434449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58438344 58438411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58440843 58440936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58442525 58442599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58444589 58444591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (486 nt):
ATGTCTGTGACACTGCATACAGATGTGGGAGATATCAAGATAGAAGTCTTCTGTGAGAGAACACCCAAAA
CATGTGAGAATTTCTTGGCTCTTTGTGCCAGTAATTACTACAACGGCTGTGTGTTTCATAGAAATATCAA
GGGCTTCATGGTTCAAACAGGAGATCCAACAGGTACTGGAAGAGGAGGTAGCAGCATCTGGGCCAAAAAG
TTTGAGGATGAATACAGTGAATATCTGAAGCACAATGTTCGAGGTGTTGTATCTATGGCTAATAATGGCC
CAAATACCAATGGATCTCAGTTCTTCATCACCTATGGCAAGCAGCCACACTTGGACATGAAATATACAGT
GTTTGGAAAGGTAATAGATGGTCTGGAGACTTTGGATGAGTTGGAGAAGTTACCAGTAAATGAGAAGACA
TACAGACCTCTTAATGATGTACACATTAAGGACATAACTATTCATGCCAACCCATTTGCTCAGTAG

Translation (161 aa):
MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCVFHRNIKGFMVQTGDPTGTGRGGSSIWAKK
FEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKT
YRPLNDVHIKDITIHANPFAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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