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Report for CCDS35174.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35174.1 Public Homo sapiens 9 SOHLH1 24 110 108 CCDS HistoryNCBI Gene:402381Re-query CCDS DB by CCDS ID:35174.1Re-query CCDS DB by GeneID:402381See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35174.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000298466.9 ENSP00000298466.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000298466.9Link to Ensembl Protein Viewer:ENSP00000298466.5Re-query CCDS DB by Nucleotide ID:ENST00000298466Re-query CCDS DB by Protein ID:ENSP00000298466
Original member Current member NCBI NM_001012415.3 NP_001012415.3 Accepted alive Link to Nucleotide Sequence:NM_001012415.3Link to Protein Sequence:NP_001012415.3Re-query CCDS DB by Nucleotide ID:NM_001012415Re-query CCDS DB by Protein ID:NP_001012415Link to BLAST:NP_001012415.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001012415.3 328 Q5JUK2-1 328 100% 0 0

Chromosomal Locations for CCDS 35174.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 135694346 135694457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135695050 135695263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135696612 135696805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135697506 135697627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135698329 135698476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135698995 135699126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135699403 135699467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGGCGTCCCGGTGCTCCGAGCCCTACCCGGAGGTCTCCAGAATCCCTACCGTCAGGGGATGCAACGGCT
CCCTGTCTGGTGCCCTCTCCTGCTGCGAGGACTCGGCCCGGGGCTCGGGCCCGCCCAAGGCCCCTACGGT
GGCCGAGGGTCCCAGCTCCTGCCTTCGGCGGAACGTGATCAGCGAGAGGGAGCGCAGGAAGCGGATGTCG
TTGAGCTGTGAGCGTCTGCGGGCCCTGCTGCCCCAGTTCGATGGCCGGCGGGAGGACATGGCCTCGGTCC
TGGAGATGTCTGTGCAGTTCCTGCGGCTTGCCAGCGCCCTGGGGCCCAGTCAGGAGCAGCACGCTATTCT
TGCTTCCTCCAAGGAAATGTGGCACTCGTTGCAGGAGGATGTTTTACAGTTGACGTTGTCGAGTCAGATT
CAAGCAGGTGTGCCAGACCCTGGGACGGGAGCGTCCAGCGGGACTCGAACCCCAGATGTGAAGGCGTTTC
TGGAAAGTCCTTGGTCCCTGGATCCAGCGTCGGCCAGCCCAGAGCCCGTGCCGCACATCCTTGCGTCCTC
CAGGCAGTGGGACCCCGCGAGCTGCACGTCCCTGGGCACGGACAAGTGTGAGGCACTGTTGGGGCTGTGC
CAGGTGCGGGGTGGGCTGCCCCCTTTCTCAGAACCTTCCAGCCTGGTGCCGTGGCCCCCAGGCCGGAGTC
TTCCTAAGGCTGTGAGGCCACCCCTGTCCTGGCCTCCGTTCTCGCAGCAGCAGACCTTGCCCGTGATGAG
CGGGGAGGCCCTTGGCTGGCTGGGCCAGGCTGGGCCCCTGGCCATGGGGGCTGCACCTCTGGGGGAGCCA
GCCAAGGAGGACCCCATGCTGGCGCAGGAGGCCGGGTCTGCGTTGGGGTCTGATGTGGACGATGGGACGT
CCTTCCTGCTGACTGCTGGTCCCAGCTCGTGGCCGGGTGAGTGGGGCCCTGGGTTCAGGGCTGGTCCCCC
CGCGTAA

Translation (328 aa):
MASRCSEPYPEVSRIPTVRGCNGSLSGALSCCEDSARGSGPPKAPTVAEGPSSCLRRNVISERERRKRMS
LSCERLRALLPQFDGRREDMASVLEMSVQFLRLASALGPSQEQHAILASSKEMWHSLQEDVLQLTLSSQI
QAGVPDPGTGASSGTRTPDVKAFLESPWSLDPASASPEPVPHILASSRQWDPASCTSLGTDKCEALLGLC
QVRGGLPPFSEPSSLVPWPPGRSLPKAVRPPLSWPPFSQQQTLPVMSGEALGWLGQAGPLAMGAAPLGEP
AKEDPMLAQEAGSALGSDVDDGTSFLLTAGPSSWPGEWGPGFRAGPPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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