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Report for CCDS33817.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33817.1 Public Homo sapiens 3 SLC9C1 24 110 108 CCDS HistoryNCBI Gene:285335Re-query CCDS DB by CCDS ID:33817.1Re-query CCDS DB by GeneID:285335See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33817.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000305815.10 ENSP00000306627.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000305815.10Link to Ensembl Protein Viewer:ENSP00000306627.5Re-query CCDS DB by Nucleotide ID:ENST00000305815Re-query CCDS DB by Protein ID:ENSP00000306627
Original member Current member NCBI NM_183061.3 NP_898884.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_183061.3Link to Protein Sequence:NP_898884.1Re-query CCDS DB by Nucleotide ID:NM_183061Re-query CCDS DB by Protein ID:NP_898884Link to BLAST:NP_898884.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_898884.1 1177 Q4G0N8-1 1177 100% 0 0

Chromosomal Locations for CCDS 33817.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 112141272 112141281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112151857 112151963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112154997 112155049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112167221 112167347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112168877 112169062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112169197 112169328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112179531 112179701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112180564 112180662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112182133 112182258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112199321 112199469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112200711 112200762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112202250 112202399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112204218 112204403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112208178 112208373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112217442 112217561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112221128 112221225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112231361 112231486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112239840 112240006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112243995 112244076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112262924 112263098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112264200 112264343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112266238 112266340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112269916 112270077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112274897 112275025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112277695 112277860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112278729 112278857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112280683 112280783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112286704 112286791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3534 nt):
ATGGCTGGAATATTTAAGGAGTTTTTTTTCAGTACTGAGGACCTCCCTGAAGTCATTCTAACATTGTCTT
TGATCAGCTCCATTGGAGCATTTTTGAACCGGCACTTGGAAGACTTTCCAATTCCTGTCCCTGTGATATT
ATTTTTACTTGGATGCAGTTTTGAAGTATTAAGCTTTACATCTTCACAGGTCCAAAGATACGCAAACGCC
ATACAATGGATGAGTCCAGACTTATTTTTTCGTATATTTACACCAGTAGTTTTCTTTACTACTGCATTTG
ACATGGATACGTACATGCTTCAAAAGTTATTTTGGCAGATACTTTTAATTTCAATTCCCGGCTTTTTGGT
TAATTATATCTTAGTTCTTTGGCATCTGGCATCTGTAAATCAATTACTTTTGAAGCCTACCCAATGGTTA
TTATTTTCAGCTATCCTTGTGAGTTCAGATCCCATGCTAACCGCAGCTGCTATAAGAGACCTTGGGCTTT
CTAGAAGCCTCATCAGTTTAATTAATGGAGAAAGTCTGATGACCTCTGTTATATCATTAATTACATTTAC
TAGTATTATGGATTTTGACCAAAGACTACAAAGTAAAAGAAACCATACCTTAGCTGAAGAGATCGTGGGT
GGAATTTGTTCATATATTATAGCAAGTTTCTTGTTTGGAATTCTAAGTTCAAAACTGATTCAATTTTGGA
TGTCAACTGTTTTTGGTGATGATGTCAATCATATAAGTCTCATCTTTTCAATTCTGTATCTCATCTTTTA
TATTTGTGAGTTAGTTGGAATGTCAGGAATATTTACTCTGGCCATTGTGGGACTTCTTTTAAATTCTACA
AGTTTTAAAGCAGCAATTGAAGAAACACTTCTTCTTGAATTCTGGACTTTTCTATCACGTATTGCTTTTC
TCATGGTGTTTACTTTCTTTGGACTTCTAATTCCTGCACATACATATTTGTATATAGAATTTGTTGATAT
ATACTATTCATTAAATATCTACTTAACATTGATTGTTTTAAGATTTCTGACCCTTCTTTTAATAAGCCCT
GTTTTGTCTCGAGTTGGTCATGAGTTCAGTTGGCGCTGGATATTCATAATGGTCTGTAGTGAAATGAAGG
GGATGCCTAATATAAACATGGCCCTTCTGCTTGCCTACTCTGATCTTTATTTTGGATCTGACAAAGAAAA
ATCTCAAATATTATTTCATGGAGTGTTAGTATGCCTAATAACCCTTGTTGTCAATAGATTTATTTTGCCA
GTGGCAGTTACTATACTAGGTCTTCGTGATGCCACATCAACAAAATATAAATCGGTTTGTTGCACATTTC
AACACTTTCAAGAGCTAACCAAGTCTGCAGCCTCTGCCCTTAAATTTGACAAAGATCTTGCTAATGCTGA
TTGGAACATGATTGAGAAAGCAATTACACTTGAAAACCCATACATGTTGAACGAAGAAGAAACAACAGAA
CATCAGAAGGTGAAATGTCCACACTGTAACAAGGAAATAGATGAGATCTTTAACACTGAAGCAATGGAGC
TGGCCAACAGGCGTCTCTTGTCAGCACAAATAGCAAGCTACCAGAGACAATACAGGAATGAGATTCTGTC
CCAGAGTGCTGTCCAGGTGTTGGTTGGTGCAGCAGAAAGTTTTGGTGAGAAGAAGGGAAAATGTATGAGT
CTTGATACAATAAAGAATTATTCTGAAAGCCAAAAAACAGTTACCTTTGCTAGAAAACTACTACTTAATT
GGGTGTATAATACCAGAAAGGAAAAAGAGGGCCCATCAAAATACTTCTTTTTTCGTATATGCCATACAAT
AGTATTTACTGAGGAATTTGAACATGTTGGATACCTTGTGATATTAATGAATATATTTCCCTTTATAATC
TCTTGGATATCCCAGTTAAATGTAATCTACCACAGCGAATTAAAACACACTAACTACTGTTTTCTTACAC
TTTATATTCTAGAGGCACTACTTAAGATAGCAGCAATGAGGAAGGACTTTTTTTCACATGCCTGGAACAT
ATTCGAGTTAGCAATTACATTAATTGGCATCTTACATGTAATACTTATTGAAATAGACACCATTAAGTAT
ATTTTTAATGAGACTGAAGTAATAGTCTTTATAAAAGTTGTTCAATTTTTTCGTATACTACGCATTTTCA
AGCTCATAGCACCAAAGTTGCTGCAAATAATAGATAAAAGAATGAGTCATCAGAAGACCTTTTGGTATGG
AATACTAAAAGGCTATGTCCAAGGCGAAGCAGACATAATGACCATAATTGATCAGATTACAAGTTCTAAA
CAGATTAAACAGATGTTATTAAAGCAAGTGATAAGGAATATGGAACATGCTATAAAAGAGCTAGGCTACT
TAGAGTATGATCACCCAGAAATTGCTGTCACTGTGAAAACAAAGGAAGAAATTAATGTTATGCTCAATAT
GGCTACAGAAATTCTTAAGGCTTTTGGCTTAAAAGGAATTATTAGTAAAACTGAAGGTGCTGGAATTAAT
AAGTTAATCATGGCCAAAAAGAAAGAGGTGCTTGATTCTCAATCTATTATCAGGCCTCTTACTGTTGAAG
AAGTTCTATATCATATTCCGTGGCTAGATAAAAACAAAGATTATATAAACTTCATTCAGGAAAAAGCCAA
AGTTGTAACATTTGATTGTGGAAATGATATATTTGAAGAAGGTGATGAGCCCAAAGGAATCTATATCATT
ATTTCAGGCATGGTAAAGCTTGAAAAATCAAAGCCAGGTTTAGGGATTGATCAAATGGTGGAGTCAAAGG
AGAAAGATTTTCCGATAATTGACACAGACTATATGCTCAGTGGAGAAATAATAGGAGAGATAAACTGCTT
AACTAATGAACCTATGAAATATTCTGCCACCTGCAAAACTGTAGTGGAGACATGTTTTATTCCCAAAACT
CACTTGTATGATGCTTTTGAGCAATGCTCTCCTCTCATTAAACAAAAAATGTGGCTAAAACTTGGACTCG
CTATTACAGCCAGAAAAATCAGAGAACACTTATCTTATGAGGATTGGAACTACAATATGCAACTAAAGCT
CTCTAATATTTATGTAGTAGATATACCAATGAGTACCAAAACTGATATTTATGATGAAAATCTAATCTAT
GTTATCCTCATACATGGAGCTGTAGAAGATTGTCTGTTACGAAAAACTTATAGAGCACCTTTCTTAATTC
CTATAACATGCCATCAGATACAAAGTATTGAAGATTTCACAAAAGTAGTGATTATTCAAACTCCGATTAA
CATGAAAACATTCAGAAGGAATATTAGAAAGTTTGTTCCTAAACATAAAAGTTATCTTACACCAGGATTA
ATAGGTTCAGTTGGAACATTGGAAGAAGGCATTCAAGAAGAAAGAAATGTTAAGGAGGATGGAGCACACA
GTGCCGCCACTGCCAGGAGTCCCCAGCCTTGCTCCCTGCTGGGGACAAAGTTCAACTGTAAGGAGTCCCC
TAGAATAAACCTAAGGAAAGTCAGGAAAGAGTAA

Translation (1177 aa):
MAGIFKEFFFSTEDLPEVILTLSLISSIGAFLNRHLEDFPIPVPVILFLLGCSFEVLSFTSSQVQRYANA
IQWMSPDLFFRIFTPVVFFTTAFDMDTYMLQKLFWQILLISIPGFLVNYILVLWHLASVNQLLLKPTQWL
LFSAILVSSDPMLTAAAIRDLGLSRSLISLINGESLMTSVISLITFTSIMDFDQRLQSKRNHTLAEEIVG
GICSYIIASFLFGILSSKLIQFWMSTVFGDDVNHISLIFSILYLIFYICELVGMSGIFTLAIVGLLLNST
SFKAAIEETLLLEFWTFLSRIAFLMVFTFFGLLIPAHTYLYIEFVDIYYSLNIYLTLIVLRFLTLLLISP
VLSRVGHEFSWRWIFIMVCSEMKGMPNINMALLLAYSDLYFGSDKEKSQILFHGVLVCLITLVVNRFILP
VAVTILGLRDATSTKYKSVCCTFQHFQELTKSAASALKFDKDLANADWNMIEKAITLENPYMLNEEETTE
HQKVKCPHCNKEIDEIFNTEAMELANRRLLSAQIASYQRQYRNEILSQSAVQVLVGAAESFGEKKGKCMS
LDTIKNYSESQKTVTFARKLLLNWVYNTRKEKEGPSKYFFFRICHTIVFTEEFEHVGYLVILMNIFPFII
SWISQLNVIYHSELKHTNYCFLTLYILEALLKIAAMRKDFFSHAWNIFELAITLIGILHVILIEIDTIKY
IFNETEVIVFIKVVQFFRILRIFKLIAPKLLQIIDKRMSHQKTFWYGILKGYVQGEADIMTIIDQITSSK
QIKQMLLKQVIRNMEHAIKELGYLEYDHPEIAVTVKTKEEINVMLNMATEILKAFGLKGIISKTEGAGIN
KLIMAKKKEVLDSQSIIRPLTVEEVLYHIPWLDKNKDYINFIQEKAKVVTFDCGNDIFEEGDEPKGIYII
ISGMVKLEKSKPGLGIDQMVESKEKDFPIIDTDYMLSGEIIGEINCLTNEPMKYSATCKTVVETCFIPKT
HLYDAFEQCSPLIKQKMWLKLGLAITARKIREHLSYEDWNYNMQLKLSNIYVVDIPMSTKTDIYDENLIY
VILIHGAVEDCLLRKTYRAPFLIPITCHQIQSIEDFTKVVIIQTPINMKTFRRNIRKFVPKHKSYLTPGL
IGSVGTLEEGIQEERNVKEDGAHSAATARSPQPCSLLGTKFNCKESPRINLRKVRKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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