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Report for CCDS30351.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30351.2 Public Mus musculus X Tbx22 23 108 98 CCDS HistoryNCBI Gene:245572Re-query CCDS DB by CCDS ID:30351.2Re-query CCDS DB by GeneID:245572See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 30351.2
The coding region has been updated to represent an alternative splicing pattern, resulting in an extended N-terminus that is more supported by the available transcript data, and by conservation in rat.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 30351.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168174.8 ENSMUSP00000128247.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168174.8Link to Ensembl Protein Viewer:ENSMUSP00000128247.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000168174Re-query CCDS DB by Protein ID:ENSMUSP00000128247
Original member Current member NCBI NM_181319.5 NP_851836.2 Accepted alive Link to Nucleotide Sequence:NM_181319.5Link to Protein Sequence:NP_851836.2Re-query CCDS DB by Nucleotide ID:NM_181319Re-query CCDS DB by Protein ID:NP_851836Link to BLAST:NP_851836.2

Chromosomal Locations for CCDS 30351.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 107668070 107668109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107676861 107677037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107677606 107677777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107678552 107678653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107680108 107680282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107681141 107681305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107681636 107681700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107682115 107682200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107684847 107685460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1596 nt):
ATGGACACAGAGATACCCACTGCTGCTTCTAGCCTACCAGGGATGGCTCTGAGCTCTCGCGCGCACGCCT
TCTCCGTGGAGGCCTTAATGGGGAGACCCAGCAAAAGAAAAGCTCAAGACCCAAGAGAGGAGATGCAGCC
TGAGCTGCAGGAGGAGCAGTTCGTGGAGGAAGGGGAGGAGATACTGAGGAGCCCTTCTAGGGACAGTCAA
CAGCCCGAAAAGCGACTCAAGGCAGAATCTTCAAAAACTGTTTTCTCCTGCTCTGACGAGAGCAACAGCC
AGGAAAGTCTGCAAGAAGAAAGTGTTATCCAAGTGGAGCTTCAGGGATCTGACCTATGGAAGAGATTCCA
CGACATTGGCACTGAGATGATCATTACCAAGGCGGGCAGACGTATGTTTCCTTCTGTTCGGATCAAGGTG
AAAGGGATGGACCCTGTGAAGCAGTACTATGTGATTTTGGACGTGGTACCGGTGGATTCCAAACGCTATA
GGTATGTGTATCACAGCTCACAGTGGATGGTAGCTGGAAATACTGACCATTCGTGCATAACTCCCAGATT
CTATGTCCACCCGGACTCCCCTTGCTCTGGAGAAAACTGGATGCGTCAAATCATCTCTTTTGATCGAGTG
AAACTCACCAACAATGAGATGGATGACAAGGGCCATATCATTCTGCAGTCCATGCATAAGTACAACCCCC
GTGTGCATGTGGTGGAACAGGACAGCAGGATTGACCTGTCCCTGATTGAGTCCTTTCCTACGGAAGGCGT
TAAAACATTCTCCTTTAAAGAAACTGAATTCACTACTGTGACAGCTTACCAAAACCAGCAGATTACCAAA
CTGAAAATAGACAGGAATCCTTTTGCCAAAGGATTTAGAGATCCTGGGAGAAATAGGGGTGTCTTAGATG
GATTTTTAGAGACCTACCCATGGATGCCTTCTTTCTCTATGGATTTTAAAACTTTTGTCACAGACACACA
AAGTGGAAGCAGTGGCTCATCTCCAGTGACCTCTAGTGGAGGAGCTCCCTCTCCTTTGAACTCCTTACTT
TCTCCATCTTGTTCTCCACCTATGGTTTACATACCTCCAAGCTCCTTTGGGATGACCTATCCAGATGCAT
ACCTGCACAGTGTCAACATACCCTTCTGCTACAGAATTTGTCCAACTAATAATTGGCGATCACAACCTTT
TGTTTTACCTACTCCTGAAAGGCTACCAAGTTTCATCATTCCTCAGACCTTACCCCCACTCATGATGGAA
GTCCCAGTGGTATCCTCCAGGGGCATCATCAATCCAAACAGTGGCTTACATGAAGACTGCAATGGGCAGT
GTCTACAAGCATCTCATTCTGCCAATCAAATGTTATATGGATTACAGAATCCTGGAAACATTTTCCATCC
AAACGCCATTGCCCAAGAAGCAATCAGTTATCCTTTTCATCCTCCTAATGGCTGTTATAGGTACACCATC
TCCATGCCACCTAGACTGGAAAATGTTGCCAGTCACCTCAGTGAAAATGGTACCAGTCAGATTTCTTTTA
CTGAAGGTAGCTGTGATCATTCCCATTGGTATCCAGCCATTAACCATTACCTTTAA

Translation (531 aa):
MDTEIPTAASSLPGMALSSRAHAFSVEALMGRPSKRKAQDPREEMQPELQEEQFVEEGEEILRSPSRDSQ
QPEKRLKAESSKTVFSCSDESNSQESLQEESVIQVELQGSDLWKRFHDIGTEMIITKAGRRMFPSVRIKV
KGMDPVKQYYVILDVVPVDSKRYRYVYHSSQWMVAGNTDHSCITPRFYVHPDSPCSGENWMRQIISFDRV
KLTNNEMDDKGHIILQSMHKYNPRVHVVEQDSRIDLSLIESFPTEGVKTFSFKETEFTTVTAYQNQQITK
LKIDRNPFAKGFRDPGRNRGVLDGFLETYPWMPSFSMDFKTFVTDTQSGSSGSSPVTSSGGAPSPLNSLL
SPSCSPPMVYIPPSSFGMTYPDAYLHSVNIPFCYRICPTNNWRSQPFVLPTPERLPSFIIPQTLPPLMME
VPVVSSRGIINPNSGLHEDCNGQCLQASHSANQMLYGLQNPGNIFHPNAIAQEAISYPFHPPNGCYRYTI
SMPPRLENVASHLSENGTSQISFTEGSCDHSHWYPAINHYL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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