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Report for CCDS27585.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27585.1 Public Mus musculus 15 Ppp1r16a 23 108 98 CCDS HistoryNCBI Gene:73062Re-query CCDS DB by CCDS ID:27585.1Re-query CCDS DB by GeneID:73062See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27585.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037551.14 ENSMUSP00000037356.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037551.14Link to Ensembl Protein Viewer:ENSMUSP00000037356.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000037551Re-query CCDS DB by Protein ID:ENSMUSP00000037356
Original member Current member EBI ENSMUST00000135388.2 ENSMUSP00000155515.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000135388.2Link to Ensembl Protein Viewer:ENSMUSP00000155515.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000135388Re-query CCDS DB by Protein ID:ENSMUSP00000155515
Original member Current member NCBI NM_001358933.1 NP_001345862.1 Accepted alive Link to Nucleotide Sequence:NM_001358933.1Link to Protein Sequence:NP_001345862.1Re-query CCDS DB by Nucleotide ID:NM_001358933Re-query CCDS DB by Protein ID:NP_001345862Link to BLAST:NP_001345862.1
Original member Current member NCBI NM_033371.3 NP_203535.1 Accepted alive Link to Nucleotide Sequence:NM_033371.3Link to Protein Sequence:NP_203535.1Re-query CCDS DB by Nucleotide ID:NM_033371Re-query CCDS DB by Protein ID:NP_203535Link to BLAST:NP_203535.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345862.1 524 Q923M0 524 100% 0 0
NP_203535.1 524 Q923M0 524 100% 0 0

Chromosomal Locations for CCDS 27585.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 76690894 76691152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76691697 76691767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76691855 76692000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76692837 76692940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76693014 76693138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76693227 76693352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76693439 76693514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76693595 76693724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76693868 76694030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76694298 76694672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1575 nt):
ATGGCCGAGCACCTGGAGCTGCTGGCAGAGATGCCCATGGTAGGCAGGATGAGTACCCAGGAGCGCCTGA
AGCATGCCCAGAAGCGACGTGCCCAGCAGGTAAAGATGTGGGCCCAGGCTGAGAAGGAGGCTCACAGCAA
GAAGGGCCATGGGGAGCGACCATGGAAGGAGGTGGCTGGCCTCAGGCCTCGGAAGCATGTCCTCTTCCCT
CCCAGCGTTGCCCTTCTGGAGGCTGCTGCCCGAAACGACTTGGAGGAAGTCCGCCAGTTCCTTACCAGTG
GGGTTAGCCCCAACCTGGCCAATGAAGATGGCTTGACTGCACTGCACCAGTGCTGCATTGACGACTTCCA
AGAGATGGCACAGCAGCTCCTGGACGCTGGGGCTGATGTCAATGCTCGAGACAGTGAGTGCTGGACACCT
CTGCATGCTGCAGCTACCTGTGGCCATCTGCATCTGGTGGAACTCCTTATTTCACGTGGTGCAGATCTCC
TTGCAGTCAATTCCGATGGGAATATGCCCTACGACCTGTGTGAGGACGCACAGACGCTGGATTGCCTTGA
GACTGCCATGGCCAACCAGGGTATCACCCAGGAGGGCATTGAGGAGGCCCGGGCAGTGCCAGAGCTGTGC
ATGCTGAATGACCTCCAGAACCGCCTGCAAGCTGGGGCCAACCTCAGTGACCCTTTGGATCATGGGGCTA
CTCTGCTGCACATCGCCGCTGCTAATGGGTTCAGTGAGGTGGCTACCCTGCTGCTGGAGCAAGGCGCCAG
CCTGAGCGCTAAGGACCATGATGGCTGGGAGCCTCTGCATGCTGCGGCTTACTGGGGCCAGGTACACCTG
GTAGAATTGCTTGTGGCACATGGGGCTGATCTGAATGGAAAATCTCTGGTGGACGAGACACCCCTCGATG
TATGTGGTGATGAGGAGGTGAGAGCCAAACTGCTGGAGCTCAAGCACAAGCAAGATGCACTCCTGCGGGC
CCAGGGCCGCCAGCGCTCCCTGCTGCGCCGCCGTACCTCTAGTGCAGGCAGCCGTGGGAAGGTGGTGAGA
CGAGTGAGCCTGACACATCGCACCAACCTGTACCGCAAGGAGCATGCCCAAGAGGCCATTGTGTGGCAGC
AGCCGCCACCCACCAGTCCAGAACCTCTAGAGGATGAGGACAGGCAGACAGACGCTGAGCTCCGGCTGCA
GCCCCCGGAGGACGATGGCCCTGAGGTGGCCAGACCACACAATGGCCAAGTAGGGGCCCCCCCCGGGAGA
CACCTGTACTCCAAGCGTCTAGATCGGAGTGTCTCCTATCATCTGAGTCCTGAGGAGAACAGTGCCCCTG
ATGCCCTCGTCCGGGACAAGGCCCACCACACACTGGCAGAACTGAAACGCCAGCGAGCGGCTGCAAAGCT
TCAGCGACCTGCCCCTGAAGGGCCTGAGACTTTTGAGCCTGGCCTGTCTGTTGATGCTGGGACCTCCCAG
CCTGACTGTGGCTTCAGCACAATTGGGGACCCGCCCCTGCTCAAGCTCACTGCTCCCTCGGAGGAGGCGT
CTGTGGAGAAGAGGCCGTGTTGCTTGCTCATGTGA

Translation (524 aa):
MAEHLELLAEMPMVGRMSTQERLKHAQKRRAQQVKMWAQAEKEAHSKKGHGERPWKEVAGLRPRKHVLFP
PSVALLEAAARNDLEEVRQFLTSGVSPNLANEDGLTALHQCCIDDFQEMAQQLLDAGADVNARDSECWTP
LHAAATCGHLHLVELLISRGADLLAVNSDGNMPYDLCEDAQTLDCLETAMANQGITQEGIEEARAVPELC
MLNDLQNRLQAGANLSDPLDHGATLLHIAAANGFSEVATLLLEQGASLSAKDHDGWEPLHAAAYWGQVHL
VELLVAHGADLNGKSLVDETPLDVCGDEEVRAKLLELKHKQDALLRAQGRQRSLLRRRTSSAGSRGKVVR
RVSLTHRTNLYRKEHAQEAIVWQQPPPTSPEPLEDEDRQTDAELRLQPPEDDGPEVARPHNGQVGAPPGR
HLYSKRLDRSVSYHLSPEENSAPDALVRDKAHHTLAELKRQRAAAKLQRPAPEGPETFEPGLSVDAGTSQ
PDCGFSTIGDPPLLKLTAPSEEASVEKRPCCLLM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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