NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27550.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27550.1 Public Mus musculus 15 Zc3h3 23 108 98 CCDS HistoryNCBI Gene:223642Re-query CCDS DB by CCDS ID:27550.1Re-query CCDS DB by GeneID:223642See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27550.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100538.3 ENSMUSP00000098106.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100538.3Link to Ensembl Protein Viewer:ENSMUSP00000098106.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000100538Re-query CCDS DB by Protein ID:ENSMUSP00000098106
Original member NCBI NM_172121.1 NP_742119.1 Updated not alive Link to Nucleotide Sequence:NM_172121.1Link to Protein Sequence:NP_742119.1Re-query CCDS DB by Nucleotide ID:NM_172121Re-query CCDS DB by Protein ID:NP_742119
Current member NCBI NM_172121.2 NP_742119.1 Accepted alive Link to Nucleotide Sequence:NM_172121.2Link to Protein Sequence:NP_742119.1Re-query CCDS DB by Nucleotide ID:NM_172121Re-query CCDS DB by Protein ID:NP_742119Link to BLAST:NP_742119.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_742119.1 950 Q8CHP0 950 100% 0 0

Chromosomal Locations for CCDS 27550.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 75754919 75754950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75756623 75756966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75757540 75757724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75776990 75777121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75779066 75779135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75779280 75779438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75779514 75779556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75785453 75785637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75809528 75809678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75837467 75837663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75839256 75840564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75841850 75841895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2853 nt):
ATGGAGGAAAAGGAGCAGCTGCGGCGGCAGATACGCCTCCTGCAGGGTCTAATTGATGACTATAAAACAC
TCCACGGCAATGGCCCTGCCCTGGGCAACTCATCAGCTACTCGGTGGCAGCCACCCATGTTCCCGGGTGG
CAGGACCTTTGGCGCCCGCTACTCCCGTCCAAGTCGGAGGGGCTTCTCCTCACACCATGGCCCTTCGTGG
CGCAAGAAATACTCCCTTGTGAATCAGCCTGTGGAATCTTCTGACCCAGCCAGCGATCCTGCTTTTCAGA
CATCCCTCAGGTCTGAGGATAGCCAGCATCCTGAACCCCAGCAGTATGTACTGGAGAGACAGGTCCAGCT
CAGTCCAGATCAGAATATGGTTATTAAGATCAAGCCACCATCAAAGTCAGGTGCCATCAATGCTTCAGGG
GTCCAGCGGGGGTCCTTGGAAGGCTGTGATGACCCCTCTTGGAGTGGCCAAAGACCCCAAGGAAGTGAGG
TTGAGGTCCCTGGTGGACAACTGCAGCCTGCAAGGCCAGGAAGAACCAAGGTGGGTTACAGTGTGGACGA
CCCCCTCTTGGTCTGCCAGAAGGAGCCTGGCAAGCCTCGGGTAGTGAAGTCTGTGGGCAGGGTGAGTGAC
AGCTCTCCCGAGCATCGGCGGACAGTCAGTGAAAATGAAGTGGCCCTCAGGGTACACTTCCCATCTGTCC
TGCCCCATCACACTGCTGTGGCTCTGGGCAGGAAGGTAGGCCCTCATTCTACCAGCTATTCTGAACAGTT
CATTGGAGACCAAAGAGCAAACACTGGCCACTCAGACCAGCCAGCTTCCTTGGGGCCAGTGGTGGCTTCA
GTCAGACCAGCAACAGCCAGGCAGGTCAGGGAGGCCTCACTGCTCGTGTCCTGTCGAACCAGCAAGTTTC
GGAAAAACAACTACAAATGGGTAGCTGCCTCAGAAAAGAGCCCACGGGTCGCTCGGAGAGCCCTCAGTCC
CAGAACAACTCTGGAGAGCGGGAACAAGGCCACTTTGGGTACAGTTGGAAAGACAGAGAAGCCACAGCCT
AAAGTTGACCCAGAGGTGAGGCCGGAGAAACTGGCCACACCATCCAAGCCTGGCCTCTCTCCCAGCAAGT
ACAAGTGGAAGGCTTCCAGCCCGTCTGCTTCCTCCTCTTCCTCTTTCCGTTGGCAGTCTGAGGCTGGCAG
CAAGGACCATACTTCTCAGCTCTCCCCAGTCCCATCTAGGCCCACATCAGGGGACAGACCAGCAGGGGGA
CCCAGCAGCTTGAAGCCCCTCTTTGGAGAGTCACAGCTCTCAGCTTACAAAGTGAAGAGCCGGACCAAGA
TTATCCGGAGGCGGGGCAATACCAGCATTCCTGGGGACAAGAAGAACAGCCCTACAACTGCCACCACCAG
CAAAAACCATCTTACCCAGCGACGGAGACAGGCCCTCCGGGGGAAGAATAGCCCGGTTCTAAGGAAGACT
CCCCACAAGGGTCTGATGCAGGTCAACAGGCACCGGCTCTGCTGCCTGCCGTCCAGCCGGACCCACCTCT
CCACCAAGGAAGCTTCCAGTGTGCACATGGGGATTCCACCCTCCAATAAGGTGATCAAGACCCGCTACCG
CATTGTTAAGAAGACCCCAAGCTCTTCCTTTGGTGCTCCATCCTTCCCCTCATCTCTACCCTCCTGGCGG
GCCCGGCGCATCCCATTATCCAGGTCCCTAGTGCTAAACCGCCTTCGTCCAGCAATCACTGGGGGAGGGA
AAGCCCCACCTGGTACCCCTCGATGGCGCAACAAAGGCTACCGCTGCATTGGAGGGGTTCTGTACAAGGT
GTCTGCCAACAAGCTCTCCAAAACTTCTAGCAGGCCCAGTGATGGCAACAGGACCCTCCTCCGCACAGGA
CGCCTGGACCCTGCTACCACCTGCAGTCGTTCCTTGGCCAGCCGGGCCATCCAGCGGAGCCTGGCTATCA
TCCGGCAGGCGAAGCAGAAGAAAGAGAAGAAGAGAGAGTACTGCATGTACTACAACCGCTTTGGCAGGTG
TAACCGTGGCGAATGCTGCCCCTACATCCATGACCCTGAGAAGGTGGCCGTGTGCACCAGATTTGTCCGA
GGCACATGCAAGAAGACAGATGGGTCCTGCCCTTTCTCTCACCATGTGTCCAAGGAAAAGATGCCTGTGT
GCTCCTACTTTCTGAAGGGGATCTGCAGCAACAGCAACTGCCCCTACAGCCATGTGTACGTGTCCCGCAA
GGCTGAAGTCTGCAGTGACTTCCTCAAAGGCTACTGCCCATTGGGTGCAAAGTGCAAGAAGAAGCACACG
CTGCTGTGTCCTGACTTTGCCCGCAGGGGTATTTGTCCCCGTGGCTCCCAGTGCCAGCTGCTCCATCGTA
ACCAGAAGCGACATGGCCGGCGGACAGCTGCACCTCCTATCCCTGGGCCCAGTGATGGAGCCCCCAGAAG
CAAGGCCTCAGCTGGCCACGTACTCAGGAAGCCTACTACTACTCAGCGCTCTGTCAGACAGATGTCCAGT
GGTCTGGCTTCCGGAGCTGAGGCCCCAGCCTCCCCACCTCCCTCCCCAAGGGTATTAGCCTCCACCTCTA
CCCTGTCTTCAAAGGCCACCGCTGCCTCCTCTCCTTCCCCCTCTCCCTCTACTAGCTCCCCAGCCCCTTC
CTTGGAGCAGGAAGAAGCTGTCTCTGGGACAGGCTCAGGAACAGGCTCCAGTGGCCTCTGCAAGCTGCCA
TCCTTCATCTCCCTGCACTCCTCCCCAAGCCCAGGAGGACAGACTGAGACTGGGCCCCAGGCCCCCAGGA
GCCCTCGCACCAAGGACTCAGGGAAGCCGCTACACATCAAACCACGCCTGTGA

Translation (950 aa):
MEEKEQLRRQIRLLQGLIDDYKTLHGNGPALGNSSATRWQPPMFPGGRTFGARYSRPSRRGFSSHHGPSW
RKKYSLVNQPVESSDPASDPAFQTSLRSEDSQHPEPQQYVLERQVQLSPDQNMVIKIKPPSKSGAINASG
VQRGSLEGCDDPSWSGQRPQGSEVEVPGGQLQPARPGRTKVGYSVDDPLLVCQKEPGKPRVVKSVGRVSD
SSPEHRRTVSENEVALRVHFPSVLPHHTAVALGRKVGPHSTSYSEQFIGDQRANTGHSDQPASLGPVVAS
VRPATARQVREASLLVSCRTSKFRKNNYKWVAASEKSPRVARRALSPRTTLESGNKATLGTVGKTEKPQP
KVDPEVRPEKLATPSKPGLSPSKYKWKASSPSASSSSSFRWQSEAGSKDHTSQLSPVPSRPTSGDRPAGG
PSSLKPLFGESQLSAYKVKSRTKIIRRRGNTSIPGDKKNSPTTATTSKNHLTQRRRQALRGKNSPVLRKT
PHKGLMQVNRHRLCCLPSSRTHLSTKEASSVHMGIPPSNKVIKTRYRIVKKTPSSSFGAPSFPSSLPSWR
ARRIPLSRSLVLNRLRPAITGGGKAPPGTPRWRNKGYRCIGGVLYKVSANKLSKTSSRPSDGNRTLLRTG
RLDPATTCSRSLASRAIQRSLAIIRQAKQKKEKKREYCMYYNRFGRCNRGECCPYIHDPEKVAVCTRFVR
GTCKKTDGSCPFSHHVSKEKMPVCSYFLKGICSNSNCPYSHVYVSRKAEVCSDFLKGYCPLGAKCKKKHT
LLCPDFARRGICPRGSQCQLLHRNQKRHGRRTAAPPIPGPSDGAPRSKASAGHVLRKPTTTQRSVRQMSS
GLASGAEAPASPPPSPRVLASTSTLSSKATAASSPSPSPSTSSPAPSLEQEEAVSGTGSGTGSSGLCKLP
SFISLHSSPSPGGQTETGPQAPRSPRTKDSGKPLHIKPRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH