NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27396.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27396.1 Public Mus musculus 15 Cdh12 23 108 98 CCDS HistoryNCBI Gene:215654Re-query CCDS DB by CCDS ID:27396.1Re-query CCDS DB by GeneID:215654See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27396.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075132.7 ENSMUSP00000074632.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075132.7Link to Ensembl Protein Viewer:ENSMUSP00000074632.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000075132Re-query CCDS DB by Protein ID:ENSMUSP00000074632
Original member Current member EBI ENSMUST00000227496.1 ENSMUSP00000153750.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227496.1Link to Ensembl Protein Viewer:ENSMUSP00000153750.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227496Re-query CCDS DB by Protein ID:ENSMUSP00000153750
Original member NCBI NM_001008420.2 NP_001008420.1 Updated not alive Link to Nucleotide Sequence:NM_001008420.2Link to Protein Sequence:NP_001008420.1Re-query CCDS DB by Nucleotide ID:NM_001008420Re-query CCDS DB by Protein ID:NP_001008420
Current member NCBI NM_001008420.3 NP_001008420.1 Accepted alive Link to Nucleotide Sequence:NM_001008420.3Link to Protein Sequence:NP_001008420.1Re-query CCDS DB by Nucleotide ID:NM_001008420Re-query CCDS DB by Protein ID:NP_001008420Link to BLAST:NP_001008420.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008420.1 794 Q5RJH3 794 100% 0 0

Chromosomal Locations for CCDS 27396.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 21237681 21237911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 21358723 21359017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 21480226 21480345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 21492543 21492710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 21520265 21520452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 21537417 21537670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 21558273 21558409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 21575802 21575923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 21578430 21578547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 21583709 21583960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 21585982 21586481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2385 nt):
ATGCTTACAAGGAACTCTTTATACCTGCTTCTCTGGATCCTGTTTGATGGAGGTCTCCTAACACCACTTC
AGCCACAGCCCCAACAGACTTTAGCCACAGAACCAAAAGAAAATGTTATCCACCTTTCGGGGAGACGATC
CCATTTCCAACGAGTTAAACGTGGCTGGGTATGGAATCAGTTTTTTGTGCTGGAAGAGTACATGGGCTCC
GAACCTCAATATGTGGGGAAGCTGCATTCGGACTTGGATAAAGGAGAGGGCACTGTTAAATACACGCTCT
CCGGAGATGGTGCTGGCACTGTTTTTACAATTGATGAAACTACAGGAGACATTCATGCAATAAGAAGCCT
GGATAGAGAAGAAAAACCTTTCTACACTCTTCGTGCTCAGGCAGTGGACATAGAAACCAGGAAGCCACTG
GAGCCTGAATCAGAGTTCATCATTAAAGTGCAGGATATTAATGACAATGAACCAAAGTTTTTGGATGGAC
CTTATGTTGCTAGTGTTCCAGAAATGTCTCCTGTGGGTGCGTATGTGCTGCAGGTGAAGGCCACAGATGC
AGACGATCCTACCTATGGGAACAGTGCCAGAGTTGTTTACAGCATCCTTCAGGGGCAACCTTATTTCTCT
ATTGATCCCAAAACAGGTGTCATTAGAACAGCATTGCCAAACATGGACAGAGAAGTCAAAGAGCAGTACC
AGGTCCTCATTCAAGCGAAAGACATGGGAGGACAGCTCGGAGGACTTGCTGGAACTACAGTTGTCAACAT
CACCCTTACTGATGTCAATGACAACCCACCTCGCTTCCCAAAAAGCATCTTCCATCTGAAAGTTCCCGAG
TCTTCCCCTGTTGGCTCAGCTATTGGAAGAATAAGAGCAGTAGATCCTGATTTTGGAAAAAATGCAGAAA
TTGAATACAACATTGTCCCAGGAGATGGGGGAAATTTGTTTGACATTGTCACAGATGAGGATACACAAGA
AGGAATCATCAAATTGAAAAAGCCTTTAGATTTTGAAACCAAGAAGGCATATACTTTTAAAGTAGAGGCC
TCCAACCTTCACCTTGACCACCGCTTTCACTCTGCTGGGCCATTTAAGGATACTGCTACAGTAAAAATCA
GCGTGCTGGATGTGGATGAGCCACCAGTGTTCAGCAAACCACTGTACACCATGGAGGTTTATGAAGACAC
TCCTGTGGGGACCATCATCGGAGCTGTCACAGCACAAGACCTTGATGTGGGCAGTAGTGCTGTTAGGTAC
TTCATAGATTGGAAGAGTGATGGGGAGAGCTACTTTACAATAGATGGAACGGAAGGAACCATCGCCACTA
ATGAATTACTAGACAGAGAGAACATGGCGCAGTATAATTTCTCCATAATTGCAAGTAAAGTTAGTAACCC
ATTATTAACTAGCAAAGTTAACATACTAATTAATGTCCTAGATGTCAATGAATTTCCTCCAGAAATATCT
GTGCCATATGAGACAGCTGTATGTGAGAATGCCAAGCCAGGACAGATAATTCAGATAGTTGGTGCTGTAG
ACCGAGATCTCTCACCTGCTGGGCAGCAATTCTCCTTTAGATTAGCACCAGAGGCTGTCATCAAACCAAA
TTTTACAGTCCATGACTTCAGAAACAACACAGCTGGAATCGAAACCCGAAGAAATGGCTATAGCCGCAGG
CAGCAGGAGTTGTATTTCCTTCCCATTGTAATAGAAGACAGCAGTTATCCTGTCCAGAGCAGCACGAATA
CAATGACTATTCGTGTTTGTAGGTGTGACTCAGATGGGACCATCCTGTCTTGCAACGTGGAAGCAATTTT
TCTACCTGTAGGACTCAGCACTGGAGCTTTGATTGCAATCCTACTATGCATGGTTATACTCTTAGCTATT
GTTGTGCTGTATGTAGCACTGAGGAGGCAGAGGAAGAAAGACACCCTTATGACCTCTAAAGAAGACATCA
GAGACAATGTCATCCATTATGACGATGAAGGAGGTGGGGAGGAGGACACCCAGGCCTTTGACATCGGGGC
TCTGAGAAATCCCAAGGTGATCGAAGAGAACAAAATTCGCAGGGATATAAAACCAGACTCCCTCTGTTTA
TCTCGTCAAAGACCACAAGTGGAAGACAACACAGACATAAGGGATTTTATTCACCGAAGGCTACAGGAAA
ATGACGCAGACCCAGCGGCTCCACCATACGATTCCTTGGCCACTTATGCGTATGAGGGGAATGGCTCAGT
GGCAGAATCACTCAGCTCCATAGACTCTCTCACCACAGAAGCCGACCAGGACTATGACTATCTATCAGAC
TGGGGACCCCGCTTTAAGGTCTTGGCAGACATGTTTGGAGAAGAAGAGAGTTACAACCCCGACAATGTTA
CCTAG

Translation (794 aa):
MLTRNSLYLLLWILFDGGLLTPLQPQPQQTLATEPKENVIHLSGRRSHFQRVKRGWVWNQFFVLEEYMGS
EPQYVGKLHSDLDKGEGTVKYTLSGDGAGTVFTIDETTGDIHAIRSLDREEKPFYTLRAQAVDIETRKPL
EPESEFIIKVQDINDNEPKFLDGPYVASVPEMSPVGAYVLQVKATDADDPTYGNSARVVYSILQGQPYFS
IDPKTGVIRTALPNMDREVKEQYQVLIQAKDMGGQLGGLAGTTVVNITLTDVNDNPPRFPKSIFHLKVPE
SSPVGSAIGRIRAVDPDFGKNAEIEYNIVPGDGGNLFDIVTDEDTQEGIIKLKKPLDFETKKAYTFKVEA
SNLHLDHRFHSAGPFKDTATVKISVLDVDEPPVFSKPLYTMEVYEDTPVGTIIGAVTAQDLDVGSSAVRY
FIDWKSDGESYFTIDGTEGTIATNELLDRENMAQYNFSIIASKVSNPLLTSKVNILINVLDVNEFPPEIS
VPYETAVCENAKPGQIIQIVGAVDRDLSPAGQQFSFRLAPEAVIKPNFTVHDFRNNTAGIETRRNGYSRR
QQELYFLPIVIEDSSYPVQSSTNTMTIRVCRCDSDGTILSCNVEAIFLPVGLSTGALIAILLCMVILLAI
VVLYVALRRQRKKDTLMTSKEDIRDNVIHYDDEGGGEEDTQAFDIGALRNPKVIEENKIRRDIKPDSLCL
SRQRPQVEDNTDIRDFIHRRLQENDADPAAPPYDSLATYAYEGNGSVAESLSSIDSLTTEADQDYDYLSD
WGPRFKVLADMFGEEESYNPDNVT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH