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Report for CCDS26596.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26596.1 Public Mus musculus 13 Zfp367 23 108 98 CCDS HistoryNCBI Gene:238673Re-query CCDS DB by CCDS ID:26596.1Re-query CCDS DB by GeneID:238673See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26596.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059817.11 ENSMUSP00000050854.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059817.11Link to Ensembl Protein Viewer:ENSMUSP00000050854.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000059817Re-query CCDS DB by Protein ID:ENSMUSP00000050854
Original member Current member NCBI NM_175494.5 NP_780703.1 Accepted alive Link to Nucleotide Sequence:NM_175494.5Link to Protein Sequence:NP_780703.1Re-query CCDS DB by Nucleotide ID:NM_175494Re-query CCDS DB by Protein ID:NP_780703Link to BLAST:NP_780703.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780703.1 340 Q0VDT2-1 340 100% 0 0

Chromosomal Locations for CCDS 26596.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 64135314 64135536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64142208 64142346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64144155 64144274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64145530 64145680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64152600 64152989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1023 nt):
ATGATCCGCGGCGCCCCGGCACCCATGGCGGAGCCGCCGCCGGTCGTCTTCTGCCACGACTCCCCGAAGC
GCGTACTGGTATCGGTCATCAGGACCACGCCGGCAACGCCTCCGTGCAGCAGCGTGGGGGAGCCCGAGCC
GCCGCCGCCGCTCGTCCCCACTAGCCCCGGCTTCAGCGACTTCATGGTGTACCCGTGGCGCTGGGGTGAG
AACGCGCATAACGTGACGCTCAGCCCGGGGGCGGCGGGCGGCGTCGTTTCAGCCGGACTGCCCGTGGCGG
CTGAACTCCCGACGCTGCGGGGTGCGCCTCAGTCCTCCGCCTCCGTGGCCGCCGTGTCGGGCGGGGAGGA
CGAGGAGGAGGCGAGCAGCCCAGACAGCGGCCACCTCAAGGATGGAATCCGACGTGGAAGGCCCAGAGCA
GACACTGTTCGGGATTTAATAAATGAAGGAGAGCATTCATCTAGCAGGATTCGCTGTAACATCTGTAACA
GGGTATTTCCAAGGGAGAAATCACTCCAGGCTCACAAAAGGACTCATACAGGTGAGAGGCCATACCTGTG
TGACTACCCAGACTGTGGAAAAGCCTTTGTTCAAAGTGGACAGCTCAAAACCCACCAACGTCTTCATACC
GGAGAGAAGCCTTTTGTCTGTTCAGAAAACGGGTGCCTAAGCAGATTCACCCATGCAAACCGCCATTGTC
CAAAGCACCCTTATGCCCGGCTGAAGAGAGAAGAGCCAACGGACGCACTCAGCAAACACCAGTCTCCGGA
CAACAAGGCTGCTGCTGAGTGGCTGGCAAAGTACTGGGAGATGAGAGAGCAACGCACCCCCACCCTAAAA
GGCAAGCTAGTTCAGAAGGCTGATCAGGAGCAGCAAGACCCTCTGGAGTACCTCCAGTCTGATGAGGAAG
ACGATGAGAAGAGTGGCGCCCAGCGCCGGCTGCAAGAGCAACGAGAGAGGCTGCATGGGGCCCTGGCACT
CATTGAGCTGGCCAATCTGACAGGGGCACCACTCCGCCAGTAG

Translation (340 aa):
MIRGAPAPMAEPPPVVFCHDSPKRVLVSVIRTTPATPPCSSVGEPEPPPPLVPTSPGFSDFMVYPWRWGE
NAHNVTLSPGAAGGVVSAGLPVAAELPTLRGAPQSSASVAAVSGGEDEEEASSPDSGHLKDGIRRGRPRA
DTVRDLINEGEHSSSRIRCNICNRVFPREKSLQAHKRTHTGERPYLCDYPDCGKAFVQSGQLKTHQRLHT
GEKPFVCSENGCLSRFTHANRHCPKHPYARLKREEPTDALSKHQSPDNKAAAEWLAKYWEMREQRTPTLK
GKLVQKADQEQQDPLEYLQSDEEDDEKSGAQRRLQEQRERLHGALALIELANLTGAPLRQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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