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Report for CCDS24660.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24660.2 Public Mus musculus 11 Sec24a 23 108 98 CCDS HistoryNCBI Gene:77371Re-query CCDS DB by CCDS ID:24660.2Re-query CCDS DB by GeneID:77371See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 24660.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109097.8 ENSMUSP00000104725.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109097.8Link to Ensembl Protein Viewer:ENSMUSP00000104725.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109097Re-query CCDS DB by Protein ID:ENSMUSP00000104725
Original member Current member NCBI NM_175255.3 NP_780464.2 Accepted alive Link to Nucleotide Sequence:NM_175255.3Link to Protein Sequence:NP_780464.2Re-query CCDS DB by Nucleotide ID:NM_175255Re-query CCDS DB by Protein ID:NP_780464Link to BLAST:NP_780464.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780464.2 1090 Q3U2P1-1 1090 100% 0 0

Chromosomal Locations for CCDS 24660.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 51695127 51695241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51696649 51696752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51700814 51700906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51701158 51701262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51704276 51704413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51707128 51707303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51708935 51709045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51712189 51712362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51713531 51713689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51715125 51715245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51716439 51716645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51717724 51717779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51721815 51721933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51723584 51723696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51726485 51726594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51729452 51729578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51731803 51731905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51733392 51733564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51733770 51733927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51734584 51734661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51736351 51736521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51743536 51744000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51756077 51756173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3273 nt):
ATGGCCCAGCCCCGGATCCCCGCTGCCCGCGGTGCCGCAGCTAGCCTCCAGGCCCAGAACGGAGCCGCCT
CAGCCTCGGGGTCTCCCTACACCAACGGTCCTGTCCACAATACACTGATGTCTCCACAAGTGTCATCGAG
TCAAGGCTATGATTCGCAACCTCCAGGATCCTACCCTCGTCCAATGCCAGCAAAGACTTTGAATCCATTC
TCTGCACAGTCGAACTACGGTGGTTCTCAGGGATCTGGGCAGACTCTTAATAGTCCACTTGTGACTTCCG
GTCCAGTACTACCTTCACTTCATAGTGGTCCTGTTCCCCGAATGCCACTACCTACTTCTCAGAACCCAGC
TGCTACACCAATGCCTTCTGGTAGCTTTCTTCCTGGAGCCAACCCACCCCCACCTTTGAATTGGCAATAT
AACTATCCATCCACAGGACCGCAGACTAACCATTTTCCTCATGTAGCTCCACCAACTCTACCTGGGAATC
CAAATTTAACAGCGGATCATCAATATGTTTCTTCTGGAGACCCTGCACTTCAAACCAGCTTCAAAAAGCC
AGGTTCTGCACTTCCCTTACAGAACCCACCTCTGCCCCCCACTTTTCAGCCAGGAGCTCCTCCTGGGCCC
CCTCCAGCTGGAGGCCCACCTCCCAGCCGGGGCCCCGCGCCCCAGAAAACACCTCCTCGGGCTGCACCCC
CACCTTCATTTAACTCAGCTGTCAATCAGGAAGGTATTACGTCAAATGCCAATAATGGATCTACGGCGGC
TCATAATACTTATGATGAGATTGAAGGAGGTGGCTTCTTGGCAACACCACAGCTTGTTAATCAGAACCCC
AAAACAAGCCGAAGTGTGGGCTCTGCATACCCCTCCCTGCCACCAGGCTACCAGAACAGCGCACCACCTG
TGGCTGGGATGCCACCACCCTCCCTCAGTTACCCAAGTGGCCCCCAGGCCTTTACTCAGACTCCCTTAGG
TGCTAATCATTTAACTGCAAGCATGAGTGGATTAAGTCTGCATCCAGAGGGACTAAGAGTTGTCAATCTT
CTTCAAGAAAGGAACATGCTTCCTTCCACACCACTGCAGCCTCCAGTCCCAAATCTGCTTGAAGACATCC
AGAAACTCAACTGTAACCCAGAGTTGTTCCGATGCACGCTGACGAGTGTCCCTCAGACTCAGGCCTTACT
GAATAAAGCCAAGCTTCCTCTGGGGCTGCTGCTCCACCCCTTCAAGGACCTAGTGCAGTTGCCCGTGGTC
ACCTCCAGCACAATTGTGAGATGCCGTTCATGCAGGACTTACATTAACCCTTTCGTCAACTTCCTTGATC
AAAGAAGGTGGAAATGTAACTTATGTTATCGAGTCAATGATGTTCCTGAAGAATTCATGTACAACCCTTT
AACCAGAGTTTATGGAGAACCTCACAAAAGACCTGAAGTCCAGAATGCTACTATTGAGTTTATGGCTCCT
TCAGAATACATGTTACGACCACCACAACCTCCAGTGTACCTCTTTGTATTTGATGTATCTCACAACGCAA
TAGAAACTGGATACTTGAATTCAGTTTGCCAGAGTTTGTTAGACAATCTGGATCTGCTTCCTGGCAACAC
TAGGACAAAAATCGGTTTCATAACATTTGATAGCACTATCCATTTCTACAGTCTTCAGGAAGGTCTCTCC
CAGCCTCAGATGCTAATAGTTTCAGATATTGACGATGTTTTTATCCCTATGCCAGAGAACTTACTAGTAA
ACTTAAATGAAAGTAAAGAGCTTGTTCAAGATTTACTGAAAACGCTGCCACAAATGTTTACGAAGACGCT
GGAGACCCAGAGTGCCTTGGGTCCTGCACTTCAGGCTGCATTCAAGCTGATATCACCAACTGGTGGTCGA
ATGTCTGTCTTCCAAACACAACTCCCAACGCTTGGTGTAGGAGCTCTGAAACCACGAGAGGAACCCAACC
AAAGGTCATCTGCTAAGGAAATACATCTGACACCATCCACTGACTTCTATAAGAAATTAGCCTTGGACTG
TTCTGGGCAGCAAGCAGCTGTTGACTTATTCCTTCTCAGTGGACAGTATTCTGATTTGGCTTCCCTAGGC
TGCATCTCTCGGTACTCAGCGGGTAGTGTGTATTACTATCCCTCGTACCATCACCAGCACAACCCAGTGC
AAGTACAGAAACTACAGAAGGAACTACACAGGTACCTCACTCGGAAGATTGGATTTGAGGCAGTCATGAG
GATCCGGTGCACCAAAGGTCTTTCCATTCATACTTTCCATGGGAACTTCTTCGTCCGTTCTACAGACTTA
CTGTCTCTTCCCAATGTCAACCCAGATGCTGGGTATGCGGTCCAGATGTCAGTAGAAGAGAGTCTCACTG
ACACTCAGCTGGTTTCCTTCCAGTCAGCACTCTTATATACATCAAGCAAAGGTGAAAGAAGAATCCGTGT
GCATACTTTGTGTTTGCCGGTAGTTTCTACCCTGAATGAAGTCTTTCTTGGAGCTGATGTGCAAGCAATT
TCAGGGTTATTAGCCAATATGGCTGTTGACAGGTCGGTGACTGCCAGCCTGAGTGATGCCCGGGATGCTC
TGGTGAACGCTGTCATCGACTCTCTCTCAGCTTACCGCTCTTCAGTCCTGAGTGGTCAGCAGCCAGGCCT
CATGGTTCCTTTCTCCTTGAGGCTTTTCCCACTTTTTGTGTTGGCTCTCCTAAAACAGAAATCTTTCCAG
ACTGGGACAAGTATACGTCTAGATGAACGAATTTTTGCCATGTGTCAAGTGAAAAGCCAGCCATTGGTTC
ACCTCATGCTCACAACACATCCCAGTTTGTACAGAGTTGACAACCTCTCAGATGAGGGAGCTCTCAACAT
CAATGACAGAACCATACCTCAGCCCCCCATTCTTCAGCTCTCGGTGGAGAAGTTGAGCAGAGATGGAGCG
TTCCTCATGGATGCAGGCTCATTACTGATGCTTTGGGTTGGAAGAAATTGTTCACAGAATTTTCTCAGCC
AAGTTCTGGGAGTTCAAAACTATGCATCAATTCCACAGACAATGACAGATCTTCCAGAACTTGATACACC
AGAATCTGCCAGAATAGCAGCGTTCATCTCATGGCTCAGAGAACAGAGGCCATTTTTCCCAGTACTCTAT
GTAATCAGGGAGGAGAGTCTTATGAAAGCAGCCTTCCTTCAGAGCTTGGTAGAAGACAGAACAGAGTCTG
CACTGTCATATTATGAATTCCTCCTGCACATACAGCAGCAAGTGAACAAGTGA

Translation (1090 aa):
MAQPRIPAARGAAASLQAQNGAASASGSPYTNGPVHNTLMSPQVSSSQGYDSQPPGSYPRPMPAKTLNPF
SAQSNYGGSQGSGQTLNSPLVTSGPVLPSLHSGPVPRMPLPTSQNPAATPMPSGSFLPGANPPPPLNWQY
NYPSTGPQTNHFPHVAPPTLPGNPNLTADHQYVSSGDPALQTSFKKPGSALPLQNPPLPPTFQPGAPPGP
PPAGGPPPSRGPAPQKTPPRAAPPPSFNSAVNQEGITSNANNGSTAAHNTYDEIEGGGFLATPQLVNQNP
KTSRSVGSAYPSLPPGYQNSAPPVAGMPPPSLSYPSGPQAFTQTPLGANHLTASMSGLSLHPEGLRVVNL
LQERNMLPSTPLQPPVPNLLEDIQKLNCNPELFRCTLTSVPQTQALLNKAKLPLGLLLHPFKDLVQLPVV
TSSTIVRCRSCRTYINPFVNFLDQRRWKCNLCYRVNDVPEEFMYNPLTRVYGEPHKRPEVQNATIEFMAP
SEYMLRPPQPPVYLFVFDVSHNAIETGYLNSVCQSLLDNLDLLPGNTRTKIGFITFDSTIHFYSLQEGLS
QPQMLIVSDIDDVFIPMPENLLVNLNESKELVQDLLKTLPQMFTKTLETQSALGPALQAAFKLISPTGGR
MSVFQTQLPTLGVGALKPREEPNQRSSAKEIHLTPSTDFYKKLALDCSGQQAAVDLFLLSGQYSDLASLG
CISRYSAGSVYYYPSYHHQHNPVQVQKLQKELHRYLTRKIGFEAVMRIRCTKGLSIHTFHGNFFVRSTDL
LSLPNVNPDAGYAVQMSVEESLTDTQLVSFQSALLYTSSKGERRIRVHTLCLPVVSTLNEVFLGADVQAI
SGLLANMAVDRSVTASLSDARDALVNAVIDSLSAYRSSVLSGQQPGLMVPFSLRLFPLFVLALLKQKSFQ
TGTSIRLDERIFAMCQVKSQPLVHLMLTTHPSLYRVDNLSDEGALNINDRTIPQPPILQLSVEKLSRDGA
FLMDAGSLLMLWVGRNCSQNFLSQVLGVQNYASIPQTMTDLPELDTPESARIAAFISWLREQRPFFPVLY
VIREESLMKAAFLQSLVEDRTESALSYYEFLLHIQQQVNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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