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Report for CCDS24268.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24268.2 Reviewed, update pending Mus musculus 10 Apof 23 108 98 CCDS HistoryNCBI Gene:103161Re-query CCDS DB by CCDS ID:24268.2Re-query CCDS DB by GeneID:103161See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 24268.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050901.4 ENSMUSP00000050300.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050901.4Link to Ensembl Protein Viewer:ENSMUSP00000050300.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000050901Re-query CCDS DB by Protein ID:ENSMUSP00000050300
Original member Current member NCBI NM_133997.3 NP_598758.2 Pending alive Link to Nucleotide Sequence:NM_133997.3Link to Protein Sequence:NP_598758.2Re-query CCDS DB by Nucleotide ID:NM_133997Re-query CCDS DB by Protein ID:NP_598758Link to BLAST:NP_598758.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598758.2 315 Q91V80 315 100% 0 0

Chromosomal Locations for CCDS 24268.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 128269012 128269959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGCATAGCCTCCGACTCATCCTGATGTCAATCCAGCTGCTTTGCTATCTCCTGCTGTGTCCTGTGGATG
CCACTTCACACGGAGAGGCAACCAGTGTCTCTACGGTGCTCCCTCCCTCGAAGTTGGGATACCAGATGCA
GACCTCAGACAAGCCCTTGTCCTGCCAGATGCTGCTCCCCAAGTCCCTGCCTGGCTTCACTTACATGCCC
CCTGTCTCCAAATTCCTGGTAGGCCTGGCTCTAAGGAATGCTCTGGAGGCAGCTGGCTGCCAGGCTGAGG
TCTGGGCTCTTCAGCTTCAGCTTTACCGATTAGGAGGTGTGGAGGCTACACAAGCCCTCATCCACCATCT
CCAGGAGCTCCAGAAGAGTGGACACACAGACCGGGAAGTGTCTGTGGATGCCCTGTCCTCTGCTCTGCAG
CTCTTAGCCTGGGAGCAGCCAGGTCCAAAGAGGGCCAAACGTTCGATTTCCAACACAGACTGCGACAATG
ATCAGGAACAGAGTGTCCACAATGTGGTTGACCTACTACCAGCAGTAGGCACCTACTACAACCTAGGCAC
AGCTTTGTATTACGCCATTAAGAACTGCTCTGACAAGGCCAAGGAACGAGGTCGAGATGGGGCCATAGAT
CTGGGTTATGATCTCTTGATGGCCATGGTAGGCGCGTCAGGGGGCCCAGCTGGTGCGGTGATCACGGCTG
CTCTTAAGCCAGCGATGAAGGCTGGGGTTCAGCGGCTGATCCAGTATTATTATGATGAGAAAGAGGTGAC
CACCCCTCAGCCAGAGGTGACCACCCATCAGCCAGAGACCGGAAAGGATGCCACCACAGATATCGGTGTT
GTGGAAGAAATAGCCATGTCTAATTTTGTGTCAGAAGTTGAAAGTACAACTTCTAACTGGGAGTGGCCTT
TATTAAAGAACTATGGTGTCTTGGCGTACAAGAGATAG

Translation (315 aa):
MHSLRLILMSIQLLCYLLLCPVDATSHGEATSVSTVLPPSKLGYQMQTSDKPLSCQMLLPKSLPGFTYMP
PVSKFLVGLALRNALEAAGCQAEVWALQLQLYRLGGVEATQALIHHLQELQKSGHTDREVSVDALSSALQ
LLAWEQPGPKRAKRSISNTDCDNDQEQSVHNVVDLLPAVGTYYNLGTALYYAIKNCSDKAKERGRDGAID
LGYDLLMAMVGASGGPAGAVITAALKPAMKAGVQRLIQYYYDEKEVTTPQPEVTTHQPETGKDATTDIGV
VEEIAMSNFVSEVESTTSNWEWPLLKNYGVLAYKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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