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Report for CCDS22096.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22096.2 Public Mus musculus 8 Naxd 23 108 98 CCDS HistoryNCBI Gene:69225Re-query CCDS DB by CCDS ID:22096.2Re-query CCDS DB by GeneID:69225See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 22096.1
The coding region has been updated to extend the N-terminus. The use of an alternative upstream start codon would result in a protein that is 22 aa longer. The upstream AUG has a strong Kozak signal and appears to be rodent-specific.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 22096.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033901.10 ENSMUSP00000033901.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033901.10Link to Ensembl Protein Viewer:ENSMUSP00000033901.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000033901Re-query CCDS DB by Protein ID:ENSMUSP00000033901
Original member Current member NCBI NM_026995.4 NP_081271.2 Accepted alive Link to Nucleotide Sequence:NM_026995.4Link to Protein Sequence:NP_081271.2Re-query CCDS DB by Nucleotide ID:NM_026995Re-query CCDS DB by Protein ID:NP_081271Link to BLAST:NP_081271.2

Chromosomal Locations for CCDS 22096.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 11497587 11497740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11502622 11502772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11504885 11504930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11505431 11505519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11506707 11506815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11509322 11509372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11509453 11509557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11510227 11510347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11511877 11511997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11512895 11513045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1098 nt):
ATGGGAGTCCGCTGTGTGGCAATCCGCGCCTGCGGGGGAGGTAAGATCGATCCGGGCGTCCCGCGGATGG
CCGTTCACGCCTGTGGGGCTGCGGCGGCCGTGGTGGCGCTGCTTTCCGCCGCGATCGCGCTCCAGTGGTC
GCCGCTGTACGCAGTTTTACAGAGAGCACTGTCTCTCCATACAGCACATGCGACAAAGGACATGGAGAAC
CTTTTTCAGCTGGTGAGAAACATTGTGCCTGCTCTGACGTCGAAGAAGCACAAGGGGCAAGATGGAAGAA
TAGGCATAGTCGGGGGCTGCCAAGAGTACACAGGAGCACCATATTTTGCAGGAATCTCAGCCTTGAAAGT
GGGTGCAGATTTGACCCACGTGTTCTGTGCCAGGGAGGCAGCGCCAGTGATCAAGTCCTACAGCCCAGAG
CTGATCGTCCACCCAGTCCTTGACAGTTCCAATGCTGTTGAGGAGGTGGAGAAATGGCTCCCCAGGCTGC
ATGCCCTTGTCGTGGGACCTGGCCTAGGTAGGGATGACCTTCTTCTCAACAATGTCAGGGGCATTTTGGA
ATCAACCAAGGCCAGGGACATCCCTGTGGTCATTGATGCGGACGGCCTGTGGCTCGTTGCTCAGCAGCCA
GCCCTCATCCATAGTTACCACAAGGCCATTCTCACCCCCAACCACGTGGAGTTCAGCAGACTCTGGGAAG
CTGTGCTCAGTAGTCCTATGGACAGCAACGATCTCAAGGGCTCCACACTGAAGCTCAGCCAGGCCCTGGG
GAACATCACAGTGGTCCAGAAAGGAGAGCAGGACCTGATCTCCAATGGCCAGCAGGTGCTTGTGTGTAAC
CAAGAAGGCAGCAGTCGCAGGTGTGGCGGGCAAGGCGATCTCCTGTCAGGCTCCCTGGGTGTCATGGTGC
ACTGGGCCCTCCGTGCTGGACCAGAGAAAACAAATGGCTCCAGCCCACTCCTGGTGGCTGCCTGGGGCGC
CTGCACACTCACAAGGGAGTGTAACCGGCAGGCCTTCCAGAAGTACGGGCGCTCTACAACCACTACCGAC
ATGATCACAGAGGTAGGAACTGCCTTCAGCAGGCTCTTCACGACCTGA

Translation (365 aa):
MGVRCVAIRACGGGKIDPGVPRMAVHACGAAAAVVALLSAAIALQWSPLYAVLQRALSLHTAHATKDMEN
LFQLVRNIVPALTSKKHKGQDGRIGIVGGCQEYTGAPYFAGISALKVGADLTHVFCAREAAPVIKSYSPE
LIVHPVLDSSNAVEEVEKWLPRLHALVVGPGLGRDDLLLNNVRGILESTKARDIPVVIDADGLWLVAQQP
ALIHSYHKAILTPNHVEFSRLWEAVLSSPMDSNDLKGSTLKLSQALGNITVVQKGEQDLISNGQQVLVCN
QEGSSRRCGGQGDLLSGSLGVMVHWALRAGPEKTNGSSPLLVAAWGACTLTRECNRQAFQKYGRSTTTTD
MITEVGTAFSRLFTT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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