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Report for CCDS19980.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19980.1 Public Mus musculus 6 Tsga13 23 108 98 CCDS HistoryNCBI Gene:116732Re-query CCDS DB by CCDS ID:19980.1Re-query CCDS DB by GeneID:116732See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19980.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048580.1 ENSMUSP00000040894.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048580.1Link to Ensembl Protein Viewer:ENSMUSP00000040894.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000048580Re-query CCDS DB by Protein ID:ENSMUSP00000040894
Original member Current member NCBI NM_054073.2 NP_473414.1 Accepted alive Link to Nucleotide Sequence:NM_054073.2Link to Protein Sequence:NP_473414.1Re-query CCDS DB by Nucleotide ID:NM_054073Re-query CCDS DB by Protein ID:NP_473414Link to BLAST:NP_473414.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_473414.1 273 Q9DA17 273 100% 0 0

Chromosomal Locations for CCDS 19980.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 30897074 30897243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30899929 30900056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30902253 30902395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30907401 30907604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30908470 30908541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30912211 30912292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30913565 30913587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (822 nt):
ATGGGCCCAAAGAAAAATTCCAAGTTTCAAGAAGTCAGTGGATCAAAGCCTGTGGGAAATGTCTCTATTA
GGTTTGAGAAACAACTAGGTCAAGATGATGAAGAGATGTATGATACAACTGCACAATCGAAATTTGTCCT
GAAGAACCTCAGACACTACACAGTGCATCCAAACATGGCCAAATACTATGAGCCTTTGAAGCCCACTAAA
CTGCAGAGATTCCTGACTCAAAAGAAGAAAATGAATAGTTTCATGTTAAAGGTGACAGAATATGATCAGG
ATATGACGTTACTGCTCATGACTAACAACCCACCGCCCTGCTCCATCAGTCAGGAAAAGGATGGTGCTCC
AATATACTTCCCCCCGGAGTTTCAGTTAAAGGAAACTCTCCATCGGTGCAAACCCAACAAGAATGACTTC
TTTCCCACAATGTCTCAGAAAAAGAAGTTAAAACCAGAGCTGAAGCCAGTCTTCCCTATGAAACGGCTAG
ATGATCCTACCTTCAAGGGACAACAATGGTTTAGGTTTTCTACCGACAATGATTTCAACATCGAAGGGAA
GTATTCTGAAATCTATGCTTTAAGGAAACAGAAAAAAATGTATCCTAACCTCATCTTTGCTCCAGCCTCC
CAGAGAGAGACAAAGAAACATGTTTCCATGAAGTCAGAGAGTGAAACACCAACTTCGCAAGTATTTTGGG
AACCCCTGACATTTTCAAAGCTCCTAGAAGAGAAGCCTACAAGAAGTGTGCCAGGGGAGAGCTTCTTTCG
CCATGGAAGGGCCCAGCAGTGGATTGTCAAAGATGCGGCTGTCATTTGGTGA

Translation (273 aa):
MGPKKNSKFQEVSGSKPVGNVSIRFEKQLGQDDEEMYDTTAQSKFVLKNLRHYTVHPNMAKYYEPLKPTK
LQRFLTQKKKMNSFMLKVTEYDQDMTLLLMTNNPPPCSISQEKDGAPIYFPPEFQLKETLHRCKPNKNDF
FPTMSQKKKLKPELKPVFPMKRLDDPTFKGQQWFRFSTDNDFNIEGKYSEIYALRKQKKMYPNLIFAPAS
QRETKKHVSMKSESETPTSQVFWEPLTFSKLLEEKPTRSVPGESFFRHGRAQQWIVKDAAVIW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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