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Report for CCDS19246.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19246.1 Public Mus musculus 5 Jakmip1 23 108 98 CCDS HistoryNCBI Gene:76071Re-query CCDS DB by CCDS ID:19246.1Re-query CCDS DB by GeneID:76071See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19246.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043794.10 ENSMUSP00000038504.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043794.10Link to Ensembl Protein Viewer:ENSMUSP00000038504.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000043794Re-query CCDS DB by Protein ID:ENSMUSP00000038504
Original member Current member NCBI NM_178394.4 NP_848481.2 Accepted alive Link to Nucleotide Sequence:NM_178394.4Link to Protein Sequence:NP_848481.2Re-query CCDS DB by Nucleotide ID:NM_178394Re-query CCDS DB by Protein ID:NP_848481Link to BLAST:NP_848481.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848481.2 626 Q8BVL9 626 100% 0 0

Chromosomal Locations for CCDS 19246.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 37085370 37085498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 37091127 37091621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 37100636 37100845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 37101765 37101884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 37104813 37104959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 37105611 37105751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 37107259 37107318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 37117442 37117570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 37118779 37118907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 37120941 37121024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 37123280 37123342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 37124877 37125050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1881 nt):
ATGTCTAAAAAGGGCCGCAGCAAGGGGGACAAGCCCGAGGCGGAGACGGACTCTGTGCAGATGGCTAATG
AAGAGCTGCGCGCCAAGCTGACCAACATCCAGATTGAGTTCCAGCAGGAGAAGAGCAAGGTGGGGAAGCT
GCGGGAGCGTCTGCAGGAGGCCAAGCTGGAGCGCGAGCAGGAGCAGCGTCGCCACACCGCCTACATCTCG
GAACTCAAGGCCAAGCTGCACGAGGAGAAGACGAAGGAACTGCAGGCGCTGCGCGAGGCGCTCATCCGGC
AGCACGAGCAGGAGGCAGCGCGGACCGCCAAGATCAAGGAAGGTGAGCTGCAGCGGCTGCAGGCCACGCT
GAATGTGCTGCGCGATGGCGCCGCAGACAAAGTCAAGACTGCATTGCTGGCCGACGCGCGCGAGGAGGCG
CGCAGGACCTTTGATGGCGAGCGCCAGCGGCTGCAGCAGGAGATCCTGGAGCTGAAGGCTGCGCGCAAAC
AGGCGGAAGAGGCACTCAGTAACTGCATGCAGGCAGACAAGGCCAAAGCCGCCGACCTGCGCGCTGCGTA
CCAGGCGCACCAGGATGAGGTGCACCGCATCAAGCGGGAGTGCGAACGTGACATCCGCAGACTGATGGAC
GAGATCAAAGGGAAGGAGCGGGTGATCCTGGCCCTGGAGAAGGAGCTTGGTGTGCAAACCGGGCAGACCC
AGCGGCTGCTGTTACAGAAGGAGGCTCTGGATGAGCAGCTGGTCCAGGTCAAGGAGGCAGAACGCCACCA
CAGCAGCCCAAAGAGGGAGCTTCCTCCTGGCATTGGTGACATGGCGGAGCTTATGGGTGGCCAGGATCAA
CATATGGATGAGCGAGATGTGAGGCGATTTCAACTGAAAATTGCTGAACTGAATTCAGTGATTCGGAAGC
TAGAGGACAGGAACACCCTGCTGGCTGACGAGAGGAACGAACTGCTGAAGCGCTCTCGGGAGACGGAGGT
GCAGCTGAAGCCGCTGGTGGAGAAGAACAAACGCATGAACAAAAAGAACGAGGAGCTGCTGCACAGCATC
CAGAGGATGGAGGAGAAGCTCAAGAGCCTCACGAGGGAGAACGTGGAGATGAAAGAAAAGCTGTCTGCTC
AGGCCTCGCTAAAGCGACACACGTCCCTGAATGACCTCAGTCTGACCAGGGACGAGCAGGAGATAGAGTT
CCTGAGGCTGCAGGTGCTGGAACAGCAGCATGTCATCGATGACCTCTCTCTGGAGAGAGAACGCCTGCTG
CGCTCCAAGAGGCATCGAGGGAAGAGCCTGAAGCCCCCCAAGAAGCATGTTGTGGAGACATTTTTTGGAT
TTGATGAGGAGTCCGTGGACTCTGAAACATTGTCCGAGACGTCCTACAACACGGACAGGACAGACCGGAC
CCCAGCCACGCCGGAAGAGGACTTAGATGAGACCACAACCAGAGAAGAGGCTGACCTGAGGTTCTGCCAG
CTGACCAGGGAGTACCAGGCTCTGCAGAGGGCTTATGCCCTGCTTCAGGAGCAGGTTGGGGGGACACTGG
ATGCTGAAAGGGAGGCCCGGACTCGGGAGCAGCTTCAGGCCGACCTGCTGAGGTGCCAGGCCAAAATCGA
GGACTTAGAGAAGCTGCTGGTTGAGAAGGGACAGGACGCTGCGTGGGTAGAGGAGAAGCAGGTACTCATG
AGGACAAACCAGGACCTGCTGGAGAAGATTTACAGACTGGAGATGGAGGAGAACCAGCTAAAGAGCGAAA
TGCAAGACGCCAAGGACCAGAACGAGCTGTTAGAATTCAGAGTGCTAGAACTCGAAGTAAGAGACTCTAT
CTGTTGTAAGCTCTCAAACGGAGCAGACATTCTCTTTGAGCCCAAACTGAAATTCATGTAA

Translation (626 aa):
MSKKGRSKGDKPEAETDSVQMANEELRAKLTNIQIEFQQEKSKVGKLRERLQEAKLEREQEQRRHTAYIS
ELKAKLHEEKTKELQALREALIRQHEQEAARTAKIKEGELQRLQATLNVLRDGAADKVKTALLADAREEA
RRTFDGERQRLQQEILELKAARKQAEEALSNCMQADKAKAADLRAAYQAHQDEVHRIKRECERDIRRLMD
EIKGKERVILALEKELGVQTGQTQRLLLQKEALDEQLVQVKEAERHHSSPKRELPPGIGDMAELMGGQDQ
HMDERDVRRFQLKIAELNSVIRKLEDRNTLLADERNELLKRSRETEVQLKPLVEKNKRMNKKNEELLHSI
QRMEEKLKSLTRENVEMKEKLSAQASLKRHTSLNDLSLTRDEQEIEFLRLQVLEQQHVIDDLSLERERLL
RSKRHRGKSLKPPKKHVVETFFGFDEESVDSETLSETSYNTDRTDRTPATPEEDLDETTTREEADLRFCQ
LTREYQALQRAYALLQEQVGGTLDAEREARTREQLQADLLRCQAKIEDLEKLLVEKGQDAAWVEEKQVLM
RTNQDLLEKIYRLEMEENQLKSEMQDAKDQNELLEFRVLELEVRDSICCKLSNGADILFEPKLKFM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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