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Report for CCDS17296.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17296.1 Public Mus musculus 3 Mfn1 23 108 98 CCDS HistoryNCBI Gene:67414Re-query CCDS DB by CCDS ID:17296.1Re-query CCDS DB by GeneID:67414See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17296.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091257.10 ENSMUSP00000088801.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091257.10Link to Ensembl Protein Viewer:ENSMUSP00000088801.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000091257Re-query CCDS DB by Protein ID:ENSMUSP00000088801
Original member Current member EBI ENSMUST00000118286.7 ENSMUSP00000113251.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118286.7Link to Ensembl Protein Viewer:ENSMUSP00000113251.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118286Re-query CCDS DB by Protein ID:ENSMUSP00000113251
Original member NCBI NM_024200.4 NP_077162.2 Updated not alive Link to Nucleotide Sequence:NM_024200.4Link to Protein Sequence:NP_077162.2Re-query CCDS DB by Nucleotide ID:NM_024200Re-query CCDS DB by Protein ID:NP_077162
Current member NCBI NM_024200.5 NP_077162.2 Accepted alive Link to Nucleotide Sequence:NM_024200.5Link to Protein Sequence:NP_077162.2Re-query CCDS DB by Nucleotide ID:NM_024200Re-query CCDS DB by Protein ID:NP_077162Link to BLAST:NP_077162.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077162.2 741 Q811U4 741 100% 0 0

Chromosomal Locations for CCDS 17296.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 32531905 32532016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32534238 32534373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32538270 32538432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32542806 32542930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32544067 32544175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32546588 32546695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32554155 32554308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32555474 32555541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32561465 32561586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32563012 32563138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32563375 32563479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32563793 32563895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32564076 32564305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32568257 32568409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32569488 32569684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32574234 32574368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32577063 32577141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2226 nt):
ATGGCAGAAACGGTATCTCCACTGAAGCACTTTGTGCTGGCAAAGAAAGCCATCACTGCAATCTTCGGCC
AGTTACTGGAGTTTGTTACTGAGGGCTCACATTTTGTTGAAGCAACATACAGGAATCCAGAACTTGATCG
AATAGCATCCGAGGATGATCTGGTGGAAATACAGGGCTACAGAAACAAGCTTGCTGTCATTGGGGAGGTG
CTGTCTCGGAGACATATGAAGGTGGCATTTTTTGGCAGGACAAGTAGTGGCAAGAGCTCTGTCATCAATG
CAATGCTGTGGGATAAAGTCCTCCCCAGCGGGATTGGTCACACAACCAACTGCTTCCTGAGTGTCGAGGG
GACCGATGGAGATAAAGCCTACCTTATGACCGAAGGGTCAGATGAAAAGAAAAGTGTGAAGACTGTTAAT
CAGCTGGCCCATGCCCTCCATATGGATAAAGACTTGAAAGCTGGCTGTCTTGTGCATGTATTTTGGCCCA
AAGCAAAATGTGCCCTCTTGAGAGATGACCTGGTTTTAGTAGACAGCCCAGGTACAGATGTCACCACAGA
GCTGGATATCTGGATTGATAAGTTTTGCCTTGATGCTGATGTCTTTGTTTTGGTTGCAAACTCGGAATCA
ACACTGATGAACACGGAGAAACATTTTTTCCATAAGGTGAATGAGCGGCTCTCCAAGCCCAACATCTTCA
TTCTGAATAACCGTTGGGATGCTTCTGCTTCGGAGCCGGAGTACATGGAGGATGTGCGCAGACAGCACAT
GGAGAGATGTCTTCACTTCTTGGTAGAAGAGCTCAAGGTTGTAAGTCCGTCGGAAGCTCGGAATCGGATC
TTTTTTGTTTCAGCCAAGGAAGTTCTCAACTCCAGAAAGCATAAAGCTCAGGGGATGCCAGAAGGTGGTG
GGGCACTTGCAGAAGGATTTCAAGCAAGATTACAGGAGTTTCAAAATTTTGAACAAACTTTTGAGGAGTG
TATCTCGCAGTCAGCAGTGAAAACAAAGTTTGAACAGCACACTATCAGAGCTAAACAGATACTAGACACT
GTGAAAAACATACTGGACTCAGTAAACGTGGCAGCAGCAGAGAAGAGGGTTTATTCAATGGAAGAGAGGG
AAGACCAAATCGATAGACTGGACTTTATCCGAAACCAGATGAACCTTTTAACACTGGATGTTAAGAAGAA
GATCAAGGAGGTCACGGAGGAGGTGGCAAACAAGGTTTCTTGTGCAATGACAGATGAAATTTGTCGACTA
TCTGTTTTGGTTGATGAGTTTTGTTCTGAGTTTCATCCTACCCCCAGTGTACTGAAAGTGTATAAGAGTG
AGTTAAATAAGCACATAGAAGATGGCATGGGAAGAAATTTGGCTGATCGGTGTACCAATGAAGTCAATGC
CTCCATTCTTCAATCTCAGCAAGAAATCATCGAAAACTTGAAGCCACTACTTCCAGCTGGTATACAGAAT
AAACTTCATACATTAATCCCTTGCAAAAAGTTTGACCTCAGCTATGATCTCAATTGCCACAAGCTGTGTT
CGGATTTTCAAGAGGACATTGTGTTTCGGTTTTCCCTGGGCTGGTCTTCCCTTGTACATCGATTCCTGGG
TTCCACAAATGCACAGAGGGTGCTGCTCGGGCTGTCAGAGCCCATCTTTCAGGTCCCTAGATCTTTAGCT
TCAACTCCTACTGCTCCTTCTAACCCAGCAGCCCCGGATAATGCAGCCCAGGAGGAGCTCATGATCACCC
TGATCACAGGATTGGCGTCCCTCACGTCGAGAACCTCCATGGGCATCATCGTTGTTGGGGGCGTGATTTG
GAAAACAGTGGGCTGGAAACTAATCTCTGTCACCTTAAGTATGTACGGAGCTCTGTACCTTTATGAGAGG
CTGACGTGGACGACCCGTGCGAAAGAGAGAGCGTTTAAGCAGCAGTTTGTAAACTATGCAACCGAGAAGC
TGCAGATGATTGTGAGCTTCACCAGTGCAAACTGCAGCCACCAAGTACAGCAAGAAATGGCCACTACTTT
TGCTCGACTGTGCCAACAAGTTGATGTTACTCAGAAACATCTGGAAGAGGAAATTGCAAGATTATCCAAA
GAGATAGACCAACTGGAGAAAATACAGAACAACTCAAAGCTCTTAAGAAATAAAGCTGTTCAACTTGAAA
GTGAGCTGGAGAATTTTTCGAAGCAGTTTCTACACCCGAGCAGTGGAGAATCCTAA

Translation (741 aa):
MAETVSPLKHFVLAKKAITAIFGQLLEFVTEGSHFVEATYRNPELDRIASEDDLVEIQGYRNKLAVIGEV
LSRRHMKVAFFGRTSSGKSSVINAMLWDKVLPSGIGHTTNCFLSVEGTDGDKAYLMTEGSDEKKSVKTVN
QLAHALHMDKDLKAGCLVHVFWPKAKCALLRDDLVLVDSPGTDVTTELDIWIDKFCLDADVFVLVANSES
TLMNTEKHFFHKVNERLSKPNIFILNNRWDASASEPEYMEDVRRQHMERCLHFLVEELKVVSPSEARNRI
FFVSAKEVLNSRKHKAQGMPEGGGALAEGFQARLQEFQNFEQTFEECISQSAVKTKFEQHTIRAKQILDT
VKNILDSVNVAAAEKRVYSMEEREDQIDRLDFIRNQMNLLTLDVKKKIKEVTEEVANKVSCAMTDEICRL
SVLVDEFCSEFHPTPSVLKVYKSELNKHIEDGMGRNLADRCTNEVNASILQSQQEIIENLKPLLPAGIQN
KLHTLIPCKKFDLSYDLNCHKLCSDFQEDIVFRFSLGWSSLVHRFLGSTNAQRVLLGLSEPIFQVPRSLA
STPTAPSNPAAPDNAAQEELMITLITGLASLTSRTSMGIIVVGGVIWKTVGWKLISVTLSMYGALYLYER
LTWTTRAKERAFKQQFVNYATEKLQMIVSFTSANCSHQVQQEMATTFARLCQQVDVTQKHLEEEIARLSK
EIDQLEKIQNNSKLLRNKAVQLESELENFSKQFLHPSSGES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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