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Report for CCDS16831.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
16831.2 |
Public |
Mus musculus |
2 |
Ralgapa2 |
23 |
108 |
98 |
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Public Note for CCDS 16831.1 |
The coding region has been updated to significantly extend the C-terminus to one that is more supported by available transcript and homology data. There are no full-length transcripts representing this update in mouse, but there are partial transcripts that tile across its length, and the 1910 aa protein is supported by homologous proteins, including human NP_065076.2 and western clawed frog NP_001120298.1. PMID:15451025 also presents mass spec and immunoblotting data supporting a 250 kDa protein. The update adds a C-terminal Rap/ran-GAP domain to the protein. |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 16831.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
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EBI |
ENSMUST00000109986.8 |
ENSMUSP00000105613.2 |
Accepted |
alive |
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NCBI |
NM_001033348.3 |
NP_001028520.2 |
Updated |
not alive |
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NCBI |
NM_001033348.4 |
NP_001028520.2 |
Accepted |
alive |
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Chromosomal Locations for CCDS 16831.2
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (5733 nt): ATGTTCTCCCGAAGGAGCCACGGAGATGTGAAAAAGTCCACGCAGAAGGTGCTGGACCCCAAGAAGGACG TGCTGACCCGCCTGAAGCACCTGCGGGCGCTGCTGGATAACGTGGATGCAAGCGATCTTAAGCAGTTCTT TGAGACCAACTATTCTCAGATATATTTCATCTTCTATGAAAATTTTATAACACTGGAAAATAGTTTGAAG TTAAAAGGGAATAATAAGTCACAAAGGGAGGAGCTGGACTCCATCCTCTTTCTATTTGAAAAAATACTGC AGTTTCTACCTGAACGAATTTTCTTTCGATGGCATTACCAGAGTATAGGCTCAACTTTAAAGAAGCTTTT ACACACTGGAAATTCTATTAAGATAAGATGTGAAGGAATCAGACTATTTCTTTTGTGGCTTCAAGCACTT CAGACAAACTGTGCAGAAGAGCAGGTGCTGATTTTCGCTTGCCTAGTGCCTGGTTTCCCAGCGGTCTTGT CATCCAGGGGTCCCTGCACACTGGAGACACTCATCAACCCTAGCCCTAGTATAGTTGATGCAAAAATATA CCCAGAGGAAATCACCCCACTTCTGCCAGCCATATCAGGGGAGAAGATTGCTGAGGACCAAACCTGCTTT TTTCTTCAAATACTGTTGAAATACATGGTTATTCAGGCTGCAAGCTTGGAGTGGAAGAATAAAGAGAATC AAGATACTGGTTTTAAATTTCTTTTTACGTTGTTTCGAAAGTATTATCTTCCTCATTTGTTTCCATCATT TACTAAATTAACCAACATCTACAAACCTGTACTTGAAATTCCCCATTTGAGACCAAAGCCAGTATATGTT ACTGTAACTCGAGATAATGAAACAATTTACAGTACAAAAATTCCATACATGGCAGCTCGTGTTGTTTTCA TTAAATGGATTGTAACTTTCTTTTTGGAAAAAAAGTATCTAACTGCAACACAAAACACTAAAAATGGAGT TGATGTATTGCCTAAAATCATCCAGACTGTTGGTGGTGGTGCAATACAAGAGAAGGTACCAGAGCTGGAT GGTGCTGGGTCCACAGAACAGGACAAAAGCCATTCTAACAGCAGCACCTTGTCTGACCGAAGACTCAGCA ACTCCAGTCTTTGTAGCATTGAAGAGGAGCATCGGACAGTGTATGAGATGGTGCAGCGGATCCTCCTGTC AACACGGGGTTATGTGAATTTTGTGAATGAAGTATTTCGACAGGCATTTTTGTTGCCTTCCTGTGAGATA TCTGTAACAAGAAAAGTAGTTCAAGTGTATAGGAAATGGATCCTCCAGAACAAACCTGTTTTCATGGAGG AACCAGATAAAAAGGATGTTGCTCAAGAAGATGCTGACAAATTAGGACTTTCAGAGACTGACTCCAAGGA GGCCTCATCTGAAAGTTCTGGTCATAAACGGTCATCCAGTTGGGGACGCACGTATTCCTTCACAAGTGCC ATGAGCAGAGGATGTGTGACAGAGGAGGACAACACAAATGTGAAAGCTGGGGCCCAAGCTATGTTGCAGG TCTTTCTTACGAATGCTGCAAATGTCTTTTTGCTGGAACCATGTGCCGAAGTTCCCATGCTCCTGAGAGA ACAAGTAGACGCCTCTAAAGCTGTTCTGATTATTTTTCGGCGGATGATAATGGAGCTTACAATGAATCAA AAGACATGGGAGCAGATGTTGCAAATCCTTCTCAGGATAACAGAAGCTGTCATGCAGAAGCCAAAGGATA AGCATGTCAAGGACTTGTTTGCCCAGAGCTTGGCAGGGTTGCTCTTCAGGACACTTATTGTGGCTTGGAT CCGAGCAAACCTCTGTGTGTACATTTCTCGGGAGCTCTGGGATGACTTTCTCAGGGTGCTGTCATCCCTT ACGGAATGGGAGGAACTCATCACTGAATGGTCTAACATCATGGATTCCTTGACAGCCGTGCTTGCCAGAA CTGTGTATGGAGTTGAAATGACAAACCTACCTCTAGATAAGTTAAGTGAACAAAAGGAGAAGAAGCAGCG TGGCAAAGGTTGTATCCTAGAACCCCAAAAAGGAACAGCTGTTGGGAGATCCTTTTCTCTCAGCTGGCGT AGCCATCCAGATGTGACTGAGCCAATGAGATTCAGAAGTGCCACCACATCTGGAGCACCAGGAGTGGAGA AGGCAAGAAATACTGTCCGTCAAAAAGCAACTGAAGTGGAGGAGTTCCAGCAGGCAGAGAGCACCGCCGC AGCCGACTGTGACTATCTTGTGGTAGGACAGCAGCAGGTGCCCCGGAGCAGCAGCACCTCTGACATCACT GAGCGCTTGTACTCAGACTCCTCTCAAGGTTACAGCCCCATGTTGCCTCATCCTGCTTTTTCCACGACTT CTGGGGATCAGAGCTCTGGTCCTCATGCTTGCACAGCTGGCCCTTTACCTTTGAGCCGTCTCCCCAGTGC AGGTCAAAAGGTAGAACATTCGCAGAATTTAAGCTCTTCAGAACCCAAGTCTGTTCAAGAGAGTAAAGGA CATGTGACTCATGAACATGAAGGAATAACAATGTTGGTTCGAAGGAGCAGCAGTCCCGCTGAGCTGGAGC TGAAGGATGATTTACAGCAGGCACATGGAAGATGCAGGCAGAGACAGACAAGTGAAAGTACTGGTAGTGA CACAGTTGTGGGCTACAGCAATGAAGCAGAGCTACCTGTGAGCCCGTGGCAGGCCTGTGAGGAGGACCCG GACCTGAGCACTCCCACAGATGCTGTGGCTGACTCTGATGCCCGCCACTGGTTACAACTGAGTCCTACTG ATGCTTCAAACTTAACAGACAGCAGAGAATGCCTTGCAGACGACTGTAGCATTATTGCTGGAGGAAACCT CACTGGTTGGCACCCAGACTCCGCTGCTGTGTTATGGCGAAGAGTCTTGGGAATCCTTGGAGATGTGAAT AACATCCAGTCGCCGAAGATCCATGCCAAAGTTTTTGGCTATCTCTATGAACTGTGGTATAAACTGGCCA AGATACGAGATAATTTAGCAATAAGCCTGGATAACCAGTCGTCTCCATCTCCTCCTCTCTTGATCCCACC ACTCAGAATGTTTGCATCATGGCTATTTAAGGCTACAACTCTGCCAAATGAATATAAAGAAGGCAAACTG CAAGCCTACAAACTGATCTGTGCCATGATGACCAGACGCCAGGATGTTCTGCCAAACTCTGACTTCCTGG TGCATTTTTACCTTGTGATGCACCTGGGACTAACCAGCGAGGACCAGGATGTCTTAAACACCATCATAAA AAACTGCTCACCCCGCTTTTTCTCCCTGGGTTTGCCTGGCTTCTCTATGCTGGTGGGGGACTTTATCACT GCTGCTGCCAGGGTCCTCAGTACAGACATGTTGGCGGCACCCCGTTCAGAAGCTCTCACTCTCCTTGGTT CCCTTGTCTGCTTCCCAAATACCTACCAGGAGATCCCTCTGCTGCAGTCAGTGCCAGAAGTGAGTGATGT TGTCACGGGAGCGGAAGACGTCAAGCATTACCTCATAAATATTTTACTGAAGAATGCTACCGAGGAACCA AATGAATGTGCAAGATGCATCGCCATTTGCTCCCTCGGGGTCTGGATCTGTGAAGAGCTTGCACAGAGTG CCAGCCATCCTCAGGTGAAGGATGCCATCAATGTGATAGGTGTAACTTTGAAGTTTCCTAACAAGATCGT GGCTCAGGTAGCCTGTGATGTTCTTCAGTTGTTGGTTTCCTACTGGGAAAAGCTGCAGATGTTTGAAACT GCTCTACCCCGCAAAATGGCAGAAATTCTTGTGGCCACAATTGCGTTCCTTTTACCAAGTGCAGAGTACT CGTCAGTGGAAACAGATAAAAAGTTTATTGTGTCCTTGCTCCTTTGTCTCTTGGACTGGTGCATGGCGCT GCCCGTGAGTGCCCTCCTCCACCCTGTGTCCACAGCAGTTCTAGAGGAGCTGCACCCATCCCGGGCCCCC TTGCTGGATTATATCTACAGGGTTCTGCACTGCTGTGTCTGTGGCTCCAGCACATACACACAGCAAAGTC ACTATACTCTGACCTTGGCTGACCTGTCATCCACGGATTATGACCCCTTCCTACCTCTGGCAAACGTGAG GAACTCCGAGCCAATCCAGTATCATTCATCAGCAGACCTGGGGAACCTGCTGACCGTGGAAGAGGAAAAG AAGAGAAGAAGTGTGGAATTGATCCCCCTCACTGCACGAATGGTCATGGCCCACCTAGTGAACCACCTAG GCCACTATCCACTGAGTGGGGGTCCTGCTGTGCTGCACAGCCTGGTCAGTGAGAACCATGACAATGCCCA TGTGGAAGGAACTGAGCTGTCCTCGGAGGTGTTCAGGAGCCCAAACCTGCAGCTCTTCGTATTTAATGAT AGCACCCTCATCTCCTATCTTCAGACACCAGCAGAAGGACCAGCTGGAGGGACTTCAGGGGGTTCCCTCT CAGATGTGAGAGTCATTGTGAGGGATATCTCAGGGAAGTACTCTTGGGATGGCAAGGTTTTATATGGACC TCTGGAAGGCCGTTTGGCACCCAATGGAAGGAACCCCTCATTTCAGATTTCTGGCTGGCATCATCACACA TGTGGACCTCAGAAAGATTTGTTTAACGGTGAGGAGGGAGATGATGTGCTTGACAAGTTACTTGAAAACA TTGGCCATACAAGCCCCGAATGCCTTTTACCATCACAACTAAATCTAAATGAGCCTTCCCCAACCCCATG TGCAATGAACTGGGACCAAGAGAAGGCAATCATGGAGGTCATCCTGCGCCAGAGCGCACAGGAAGATGAG TATGTGCAGAGGTGTAACTCGGATTCTTCAGTAACGGTCACCAGCCAAGGGCAGCCCTCACCCGTGGAGC CCCGGGGACCCTTTTATTTCTGCAGGTTGTTGCTTGATGACTTGGGAATGAATTCCTGGGACAGAAGGAA GAATTTTCATTTGTTGAAGAAAAATTCAAAATTATTGAGAGAGCTAAAGAATCTGGACTCGCGCCAGTGC CGCGAGACCCATAAGATTGCAGTGTTTTACATTGCTGAAGGGCAAGAAGACAAGTGTTCCATTCTAGCCA ATGAAAGAGGAAGCCAAGCATATGAAGACTTTGTTGCTGGTCTTGGATGGGAGGTGGATCTCTCAACCCA CTGTGGGTTTATGGGTGGTCTTCAGCGCAATGGCAGCACGGGACAGACAGCCCCTTACTATGCTACCTCG ACCGTGGAAGTAATTTTCCACGTTTCCACTCGGATGCCATCAGATTCAGATGATTCTCTCACCAAAAAGC TCCGTCACCTGGGGAATGATGAGGTCCACATCGTCTGGTCTGAACACTCCAGGGACTACCGCAGGGGTAT TATCCCAACAGCCTTTGGAGACGTTTCCATCATTATTTACCCAATGAAGAATCATATGTTCTTTATCACG ATAACGAAGAAGCCTGAGGTTCCATTCTTTGGGCCCCTGTTCGATGGAGCGATCGTGAGTGGGAAGCTGC TGCCAAGCCTTATCTGTGCCACATGCATCAATGCCAGCAGAGCGGTGAAGTGCCTCATCCCACTCTATCA GAGCTTCTACGAAGAGCGAGCTCTGTATCTGGAAGCAATAATTCAAAACCACCGGGAAGTCATGACATTT GAGGATTTCGCTGCTCAAGTCTTTTCTCCCTCTCCCAGCTACTCTGTCAGTGGAACGGATTAA
Translation (1910 aa): MFSRRSHGDVKKSTQKVLDPKKDVLTRLKHLRALLDNVDASDLKQFFETNYSQIYFIFYENFITLENSLK LKGNNKSQREELDSILFLFEKILQFLPERIFFRWHYQSIGSTLKKLLHTGNSIKIRCEGIRLFLLWLQAL QTNCAEEQVLIFACLVPGFPAVLSSRGPCTLETLINPSPSIVDAKIYPEEITPLLPAISGEKIAEDQTCF FLQILLKYMVIQAASLEWKNKENQDTGFKFLFTLFRKYYLPHLFPSFTKLTNIYKPVLEIPHLRPKPVYV TVTRDNETIYSTKIPYMAARVVFIKWIVTFFLEKKYLTATQNTKNGVDVLPKIIQTVGGGAIQEKVPELD GAGSTEQDKSHSNSSTLSDRRLSNSSLCSIEEEHRTVYEMVQRILLSTRGYVNFVNEVFRQAFLLPSCEI SVTRKVVQVYRKWILQNKPVFMEEPDKKDVAQEDADKLGLSETDSKEASSESSGHKRSSSWGRTYSFTSA MSRGCVTEEDNTNVKAGAQAMLQVFLTNAANVFLLEPCAEVPMLLREQVDASKAVLIIFRRMIMELTMNQ KTWEQMLQILLRITEAVMQKPKDKHVKDLFAQSLAGLLFRTLIVAWIRANLCVYISRELWDDFLRVLSSL TEWEELITEWSNIMDSLTAVLARTVYGVEMTNLPLDKLSEQKEKKQRGKGCILEPQKGTAVGRSFSLSWR SHPDVTEPMRFRSATTSGAPGVEKARNTVRQKATEVEEFQQAESTAAADCDYLVVGQQQVPRSSSTSDIT ERLYSDSSQGYSPMLPHPAFSTTSGDQSSGPHACTAGPLPLSRLPSAGQKVEHSQNLSSSEPKSVQESKG HVTHEHEGITMLVRRSSSPAELELKDDLQQAHGRCRQRQTSESTGSDTVVGYSNEAELPVSPWQACEEDP DLSTPTDAVADSDARHWLQLSPTDASNLTDSRECLADDCSIIAGGNLTGWHPDSAAVLWRRVLGILGDVN NIQSPKIHAKVFGYLYELWYKLAKIRDNLAISLDNQSSPSPPLLIPPLRMFASWLFKATTLPNEYKEGKL QAYKLICAMMTRRQDVLPNSDFLVHFYLVMHLGLTSEDQDVLNTIIKNCSPRFFSLGLPGFSMLVGDFIT AAARVLSTDMLAAPRSEALTLLGSLVCFPNTYQEIPLLQSVPEVSDVVTGAEDVKHYLINILLKNATEEP NECARCIAICSLGVWICEELAQSASHPQVKDAINVIGVTLKFPNKIVAQVACDVLQLLVSYWEKLQMFET ALPRKMAEILVATIAFLLPSAEYSSVETDKKFIVSLLLCLLDWCMALPVSALLHPVSTAVLEELHPSRAP LLDYIYRVLHCCVCGSSTYTQQSHYTLTLADLSSTDYDPFLPLANVRNSEPIQYHSSADLGNLLTVEEEK KRRSVELIPLTARMVMAHLVNHLGHYPLSGGPAVLHSLVSENHDNAHVEGTELSSEVFRSPNLQLFVFND STLISYLQTPAEGPAGGTSGGSLSDVRVIVRDISGKYSWDGKVLYGPLEGRLAPNGRNPSFQISGWHHHT CGPQKDLFNGEEGDDVLDKLLENIGHTSPECLLPSQLNLNEPSPTPCAMNWDQEKAIMEVILRQSAQEDE YVQRCNSDSSVTVTSQGQPSPVEPRGPFYFCRLLLDDLGMNSWDRRKNFHLLKKNSKLLRELKNLDSRQC RETHKIAVFYIAEGQEDKCSILANERGSQAYEDFVAGLGWEVDLSTHCGFMGGLQRNGSTGQTAPYYATS TVEVIFHVSTRMPSDSDDSLTKKLRHLGNDEVHIVWSEHSRDYRRGIIPTAFGDVSIIIYPMKNHMFFIT ITKKPEVPFFGPLFDGAIVSGKLLPSLICATCINASRAVKCLIPLYQSFYEERALYLEAIIQNHREVMTF EDFAAQVFSPSPSYSVSGTD
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