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Report for CCDS16828.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16828.1 Public Mus musculus 2 Crnkl1 23 108 98 CCDS HistoryNCBI Gene:66877Re-query CCDS DB by CCDS ID:16828.1Re-query CCDS DB by GeneID:66877See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16828.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001818.4 ENSMUSP00000001818.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001818.4Link to Ensembl Protein Viewer:ENSMUSP00000001818.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000001818Re-query CCDS DB by Protein ID:ENSMUSP00000001818
Original member Current member NCBI NM_025820.3 NP_080096.1 Accepted alive Link to Nucleotide Sequence:NM_025820.3Link to Protein Sequence:NP_080096.1Re-query CCDS DB by Nucleotide ID:NM_025820Re-query CCDS DB by Protein ID:NP_080096Link to BLAST:NP_080096.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080096.1 690 P63154 690 100% 0 0

Chromosomal Locations for CCDS 16828.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 145918424 145918600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145919740 145919988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145920597 145920698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145921772 145922011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145923844 145923924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145924715 145924774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145925508 145925699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145926776 145926946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145928121 145928299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145930534 145930700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145931270 145931428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145932246 145932337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145932813 145932965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145934554 145934604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2073 nt):
ATGGCAGCCTCCACGGCGGCCGGGAAACAGCGCATTCCTAAAGTGGCCAAGGTGAAGAACAAGGCGCCGG
CCGAAGTGCAGATAACGGCCGAGCAGCTCCTCCGAGAAGCTAAAGAGAGAGAACTCGAGCTCCTCCCACC
TCCACCTCAGCAGAAGATCACAGATGAGGAAGAATTAAACGATTACAAACTCCGGAAAAGGAAGACTTTT
GAAGATAACATAAGAAAAAATAGGACTGTGATTAGCAACTGGATAAAATACGCACAATGGGAGGAAAGTC
TAAAGGAAATTCAAAGGGCTCGATCCATATACGAGCGTGCTTTAGATGTCGACTACCGAAATATTACCCT
CTGGCTGAAATATGCAGAAATGGAGATGAAGAACCGCCAGGTCAACCATGCCCGAAACATCTGGGACCGT
GCCATCACAACTCTGCCACGCGTCAACCAGTTCTGGTATAAGTACACATACATGGAGGAGATGTTGGGCA
ACGTTGCTGGTGCCCGCCAGGTGTTTGAGCGCTGGATGGAATGGCAGCCTGAGGAGCAGGCCTGGCATTC
CTACATCAACTTCGAGCTGAGATACAAAGAGGTGGAGCGGGCCCGCACCATCTATGAACGCTTTGTGCTC
GTGCACCCTGCTGTGAAAAACTGGATCAAGTACGCAAGATTTGAAGAGAAGCATGCTTACTTTGCTCATG
CGCGGAAAGTCTACGAGAGAGCGGTGGAGTTTTTTGGGGATGAGCATATGGACGAACACCTCTATGTGGC
CTTTGCTAAATTTGAGGAAAACCAGAAAGAATTTGAAAGGGTACGAGTTATCTACAAATATGCCCTGGAT
AGGATTTCAAAACAAGAGGCCCAAGAACTCTTTAAAAACTATACCATCTTTGAGAAGAAGTTTGGTGACC
GGAGGGGTATAGAAGACATCATCGTGAGCAAACGGAGGTTCCAGTATGAAGAAGAAGTGAAGGCTAATCC
ACACAATTATGATGCATGGTTTGATTATTTACGCTTGGTGGAAAGTGATGCGGAAGCTGACACTGTGCGG
GAAGTCTATGAGAGAGCCATTGCCAATGTGCCACCCATCCAGGAGAAGAGACACTGGAAGCGCTACATCT
ACCTTTGGGTTAACTATGCACTCTATGAAGAGCTGGAAGCCAAGGATCCCGAGAGAACAAGACAGGTATA
TCAAGCGTCTTTGGAACTAATTCCTCACAAAAAGTTCACATTTGCCAAAATGTGGTTATATTATGCACAG
TTTGAAATAAGACAGAAAAATCTGCCATTTGCCAGAAGAGCTTTGGGAACTTCCATAGGCAAATGTCCGA
AGAACAAGTTATTCAAAGGATACATAGAACTGGAACTGCAGCTTCGAGAATTTGACAGATGCAGGAAGCT
TTATGAAAAGTTTTTGGAATTTGGACCTGAAAATTGTACCTCATGGATTAAGTTTGCAGAATTAGAGACA
ATCCTTGGTGATATTGAGAGAGCTCGGGCAATCTATGAATTAGCCATCAGCCAGCCACGCTTGGATATGC
CAGAGGTACTTTGGAAATCATATATTGATTTTGAGATTGAGCAGGAAGAAACTGAAAGAACACGAAACCT
TTACCGACAATTGCTTCAGCGAACACAGCATGTCAAGGTATGGATCAGTTTTGCTCAGTTTGAGTTATCG
TCTGGGAAAGAAGGAAGTGTGGCTAAATGCAGACAGATTTATGAAGAAGCTAACAAAACCATGAGAAACT
GTGAAGAAAAAGAAGAGAGGCTTATGTTGCTGGAATCCTGGAGAAGTTTTGAAGATGAATTTGGCACAGT
ATCAGACAAGGAGAGAGTAGACAAACTCATGCCAGAAAAGGTCAAGAAGAGAAGAAAGGTCCAGGCCGAC
GATGGGTCTGACGCCGGGTGGGAAGAATACTATGACTACATCTTCCCAGAGGATGCTGCCAACCAGCCTA
ACCTCAAGCTCCTGGCCATGGCCAAGCTGTGGAAGAAACAGCAACAGGAAAGAGAAGCTGCCGAACAGGA
TCCAGATAAGGACATTGATGAGAGTGAATCCTCATCTTTTTAA

Translation (690 aa):
MAASTAAGKQRIPKVAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTF
EDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDR
AITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYINFELRYKEVERARTIYERFVL
VHPAVKNWIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALD
RISKQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVR
EVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLYYAQ
FEIRQKNLPFARRALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELET
ILGDIERARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRQLLQRTQHVKVWISFAQFELS
SGKEGSVAKCRQIYEEANKTMRNCEEKEERLMLLESWRSFEDEFGTVSDKERVDKLMPEKVKKRRKVQAD
DGSDAGWEEYYDYIFPEDAANQPNLKLLAMAKLWKKQQQEREAAEQDPDKDIDESESSSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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