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Report for CCDS16768.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16768.1 Public Mus musculus 2 Rassf2 23 108 98 CCDS HistoryNCBI Gene:215653Re-query CCDS DB by CCDS ID:16768.1Re-query CCDS DB by GeneID:215653See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16768.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028814.14 ENSMUSP00000028814.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028814.14Link to Ensembl Protein Viewer:ENSMUSP00000028814.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000028814Re-query CCDS DB by Protein ID:ENSMUSP00000028814
Original member Current member EBI ENSMUST00000103182.7 ENSMUSP00000099471.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103182.7Link to Ensembl Protein Viewer:ENSMUSP00000099471.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000103182Re-query CCDS DB by Protein ID:ENSMUSP00000099471
Original member Current member NCBI NM_001362866.1 NP_001349795.1 Accepted alive Link to Nucleotide Sequence:NM_001362866.1Link to Protein Sequence:NP_001349795.1Re-query CCDS DB by Nucleotide ID:NM_001362866Re-query CCDS DB by Protein ID:NP_001349795Link to BLAST:NP_001349795.1
Original member Current member NCBI NM_175445.4 NP_780654.1 Accepted alive Link to Nucleotide Sequence:NM_175445.4Link to Protein Sequence:NP_780654.1Re-query CCDS DB by Nucleotide ID:NM_175445Re-query CCDS DB by Protein ID:NP_780654Link to BLAST:NP_780654.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349795.1 326 Q8BMS9 326 100% 0 0
NP_780654.1 326 Q8BMS9 326 100% 0 0

Chromosomal Locations for CCDS 16768.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 131996384 131996453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131998245 131998342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132000433 132000554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132001686 132001737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132002882 132002983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132004299 132004459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132005308 132005396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132007366 132007517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132009686 132009761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132012562 132012620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGGACTACACTCACCAACCTGCCCTAATCCCATGCGGACAAGACAAGTATATGCCCAAGAGTGAACTTC
TCCTACATCTGAAGACCTACAACTTGTACTATGAAGGTCAAAACCTGCAACTCCGACACCGAGAGGAGGA
AGACGAGTTCATTGTGGAGGGGTTACTGAACATCTCCTGGGGGCTGCGCAGGCCCATTCGGCTGCAGATG
CAGGATGACCACGAACGCATCCGTCCTCCTCCATCCTCCTCCTCCTGGCACTCCGGCTGTAACCTGGGCG
CACAGGGCACCACACTGAAGCCCCTCACCATGCCCACTGTTCAGATCTCAGAAGTGGATATGCCAGTTGA
AGGCCTCGAGACACACAGCCCAACAGATTCCAGAGGCCTGAAGCCTGTGCAGGAGGACACCCCACAGTTG
ATGCGCACACGCAGCGATGTTGGGGTGCGTCGCCGTGGCAACGTGAGGACATCCAGTGACCAGCGACGGA
TCAGACGCCATCGCTTCTCCATCAATGGCCATTTCTATAACCACAAGACATCAGTGTTCACACCAGCCTA
TGGCTCTGTCACCAACGTCCGCATCAACAGCACCATGACCACTCCGCAGGTCCTGAAGTTGCTGCTCAAC
AAGTTTAAGATTGAGAACTCGGCAGAGGAGTTTGCGCTGTACGTGGTCCACACCAGCGGTGAAAAGCAGA
GGCTGAAGAGCTCCGACTACCCTCTGATCGCCCGCATCCTCCAGGGCCCTTGTGAACAGATCTCCAAAGT
TTTCCTGATGGAGAAGGACCAGGTGGAGGAGGTCACCTATGACGTGGCCCAGTATATAAAGTTCGAGATG
CCAGTCCTTAAAAGCTTCATTCAGAAACTCCAGGAGGAGGAAGACCGGGAGGTGGAGAAGCTGATGCGCA
AGTACACTGTGCTCCGGCTAATGATTCGGCAAAGGCTCGAGGAGATAGCAGAGACCCCCGAGACTATCTG
A

Translation (326 aa):
MDYTHQPALIPCGQDKYMPKSELLLHLKTYNLYYEGQNLQLRHREEEDEFIVEGLLNISWGLRRPIRLQM
QDDHERIRPPPSSSSWHSGCNLGAQGTTLKPLTMPTVQISEVDMPVEGLETHSPTDSRGLKPVQEDTPQL
MRTRSDVGVRRRGNVRTSSDQRRIRRHRFSINGHFYNHKTSVFTPAYGSVTNVRINSTMTTPQVLKLLLN
KFKIENSAEEFALYVVHTSGEKQRLKSSDYPLIARILQGPCEQISKVFLMEKDQVEEVTYDVAQYIKFEM
PVLKSFIQKLQEEEDREVEKLMRKYTVLRLMIRQRLEEIAETPETI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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