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Report for CCDS16165.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16165.1 Public Mus musculus 2 Cwc22 23 108 98 CCDS HistoryNCBI Gene:80744Re-query CCDS DB by CCDS ID:16165.1Re-query CCDS DB by GeneID:80744See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16165.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065889.9 ENSMUSP00000064947.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065889.9Link to Ensembl Protein Viewer:ENSMUSP00000064947.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000065889Re-query CCDS DB by Protein ID:ENSMUSP00000064947
Original member Current member EBI ENSMUST00000111821.8 ENSMUSP00000107452.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111821.8Link to Ensembl Protein Viewer:ENSMUSP00000107452.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111821Re-query CCDS DB by Protein ID:ENSMUSP00000107452
Original member NCBI NM_001362658.1 NP_001349587.1 Updated not alive Link to Nucleotide Sequence:NM_001362658.1Link to Protein Sequence:NP_001349587.1Re-query CCDS DB by Nucleotide ID:NM_001362658Re-query CCDS DB by Protein ID:NP_001349587
NCBI NM_001362658.2 NP_001349587.1 Updated not alive Link to Nucleotide Sequence:NM_001362658.2Link to Protein Sequence:NP_001349587.1Re-query CCDS DB by Nucleotide ID:NM_001362658Re-query CCDS DB by Protein ID:NP_001349587
Current member NCBI NM_001362658.3 NP_001349587.1 Accepted alive Link to Nucleotide Sequence:NM_001362658.3Link to Protein Sequence:NP_001349587.1Re-query CCDS DB by Nucleotide ID:NM_001362658Re-query CCDS DB by Protein ID:NP_001349587Link to BLAST:NP_001349587.1
Original member NCBI NM_030560.5 NP_085037.2 Updated not alive Link to Nucleotide Sequence:NM_030560.5Link to Protein Sequence:NP_085037.2Re-query CCDS DB by Nucleotide ID:NM_030560Re-query CCDS DB by Protein ID:NP_085037
NCBI NM_030560.6 NP_085037.2 Updated not alive Link to Nucleotide Sequence:NM_030560.6Link to Protein Sequence:NP_085037.2Re-query CCDS DB by Nucleotide ID:NM_030560Re-query CCDS DB by Protein ID:NP_085037
Current member NCBI NM_030560.7 NP_085037.2 Accepted alive Link to Nucleotide Sequence:NM_030560.7Link to Protein Sequence:NP_085037.2Re-query CCDS DB by Nucleotide ID:NM_030560Re-query CCDS DB by Protein ID:NP_085037Link to BLAST:NP_085037.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349587.1 908 Q8C5N3-1 908 100% 0 0
NP_085037.2 908 Q8C5N3-1 908 100% 0 0

Chromosomal Locations for CCDS 16165.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 77896007 77896578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77903796 77904034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77904124 77904225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77905357 77905484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77907082 77907234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77908068 77908145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77911510 77911570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77915497 77915578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77917056 77917163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77920818 77920880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77920967 77921173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77921410 77921545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77924140 77924193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77924487 77924655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77927208 77927336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77929256 77929498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77931435 77931545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77932699 77932763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77936593 77936619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2727 nt):
ATGAAAAGTAGTGTGGCACACATGAAGTCCTCTGGTCACAACAGAAGGGAGACCCACAGTTCATACCGCC
GGAGCTCCTCCCCAGAAGACAGATACACAGAGCAAGAGCGGTCCCCCCGGGATAGAGGTTACTCTGATTA
CAGCCGGTCAGACTATGAGCGATCTAGAAGAGGATACTCTTACGATGACAGCATGGAATCACGAAGTAGG
GACCGAGAAAAACGCAGAGAGAGAGAGAGAGATGCAGATCATCGGAAACGGTCCCGGAAATCGCCATCCC
CTGACAGGAGTCCAGCCCGAGGCGGAGGGCAGAGTTCTCCTCAGGAGGAACCGACATGGAAGAAGAAGAA
GGATGAGCTGGACCCGCTGCTCACCCGCACTGGGGGAGCGTATATCCCTCCTGCGAAGCTCAGGATGATG
CAGGAGCAGATCACAGATAAAAGCAGCTTAGCATATCAGAGGATGAGCTGGGAGGCTCTGAAGAAATCCA
TCAATGGTCTCATCAACAAGGTCAACATCTCTAATATAAGCATTATTATCCAAGAGCTCCTTCAAGAGAA
CATTGTCAGAGGGAGAGGATTGCTGTCCAGATCTGTTCTGCAAGCCCAGAGTGCGTCTCCAATCTTCACT
CACGTTTATGCAGCTTTGGTGGCAATAATCAACTCAAAATTCCCACAGATTGGAGAATTGATCCTCAAGA
GACTAATTCTTAATTTTCGGAAAGGCTATCGAAGGAACGATAAGCAACTTTGCCTGACTGCTTCAAAATT
TGTGGCACATCTTATTAACCAAAATGTGGCACATGAGGTTCTGTGCCTGGAGATGCTCACTTTGCTACTA
GAGAGACCAACAGATGACAGTGTTGAAGTAGCTATCGGCTTCCTCAAAGAGTGTGGTCTCAAATTAACCC
AGGTGTCACCAAGGGGAATTAATGCAATCTTTGAACGCCTTCGAAACATTCTACACGAGTCTGAGATCGA
CAAAAGAGTTCAGTACATGATTGAAGTGATGTTTGCTGTACGGAAGGATGGATTCAAGGACCACCCTGTT
ATTCTGGAAGGACTTGATTTAGTGGAAGAGGACGATCAGTTTACACATATGCTCCCCTTAGAGGATGACT
ACAATCCAGAAGATGTTCTTAATGTTTTCAAGATGGATCCTAATTTTATGGAGAATGAAGAGAAGTACAA
GGCTATTAAAAAAGAAATCCTTGACGAAGGAGACAGTGATTCAAACACAGACCAAGGAGCTGGAAGTAGT
GAAGATGAGGAGGAGGAAGACGAGGAGGAGGAAGGAGAAGACGAGGAAGGAGGGCAAAAAGTAACTATTC
ATGACAAAACAGAAATCAACCTAGTCTCGTTTCGCCGTACAATCTATCTTGCCATTCAGTCAAGTTTAGA
TTTTGAAGAATGTGCACACAAGTTGCTGAAAATGGAGTTTGCAGAGAGCCAAACAAAAGAACTCTGCAAC
ATGATACTTGATTGCTGTGCCCAACAAAGGACCTATGAAAAATTTTTTGGCTTGTTAGCTGGGCGGTTTT
GTATGCTGAAAAAGGAATACATGGAATCATTTGAAAGTATATTCAAGGAACAGTACGACACCATCCATCG
CTTAGAGACAAACAAATTGAGAAATGTTGCTAAAATGTTTGCTCACCTTTTATACACAGATTCACTTCCG
TGGAGTGTTCTCGAATGTATAAAACTGAGTGAAGAGACCACGACATCGTCTAGTCGAATTTTTGTCAAGA
TCTTCTTCCAGGAACTGTGTGAATACATGGGTCTTCCTAAACTGAATGCGAGGTTGAAGGATGAAACTCT
CCAGCCATTCTTTGAAGGTCTGTTACCCAGAGACAACCCACGCAATACCCGGTTTGCCATCAACTTCTTC
ACTTCCATAGGTCTCGGAGGATTGACGGATGAACTGCGAGAACATCTGAAAAATACGCCCAAGGTCATCG
TAGCCCAGAAACCAGAAGCTGAACAAAAGAAACCAGCCCTGACATCTTCATCTTCAGAGTCTTCCTCGGC
GTCTGATTCCTCTGACTCAGAATCTGACAGCAGCGAGAGCAGCTCAGAGTCCTCTAGTGATGCGAGCGAC
TCCTCCTCCTCCTCCAGCACTCAGAGCTCTACCTCAGGTATCACGGCTCATTCAGCTAAAGGTACAAGAA
AGAAGAGACAAGGGAAGGCCAGAGGCGAAGAAGTTGATAAGTTAGCCAGGGGCCACCAGGCACTTGAGCG
GAGGCGAGAAGGAGGCAGGGAGGACCAAAGGCACCAGGAAGGGAGGACTGAGAGAGCAAGGTCTGAAAGA
CGCAGAGCTCAGAACTCACGAGATGCAGACTGGAGAGATCCCCTAGCAAAGCACATAGACGACAGAAGCC
ATGAGAATAGTCACAGCAGAGTTGGCAATGGCCGAGAACAAGGCTCACACAGAGAGCCAGAAGACAGGCA
TGGCGAGCCAAAGAAGCGGAGAGAGAGAAGAGATTCTTTTTCTGAAAATGAGAAGCAAAGAAGCCGAAAT
CAGGACAGTGATAATGTTAGAAGAAAAGATCGCTCCAAGTCAAGGGAGAGGAGTAGAAGGCATTCTGGTC
ACAAGGGAGACGACGCCAGGTGTCAGAACAGTGCAGAGAGGCGCTGGGAAAAGCCTGGCAGACGCCCTGA
ACAGTCTAGAGAGTCAAAGAGAAGTCAGGACCGGAGGAGAGAAAAGTCTCCAACAACACAGAAATAA

Translation (908 aa):
MKSSVAHMKSSGHNRRETHSSYRRSSSPEDRYTEQERSPRDRGYSDYSRSDYERSRRGYSYDDSMESRSR
DREKRRERERDADHRKRSRKSPSPDRSPARGGGQSSPQEEPTWKKKKDELDPLLTRTGGAYIPPAKLRMM
QEQITDKSSLAYQRMSWEALKKSINGLINKVNISNISIIIQELLQENIVRGRGLLSRSVLQAQSASPIFT
HVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLL
ERPTDDSVEVAIGFLKECGLKLTQVSPRGINAIFERLRNILHESEIDKRVQYMIEVMFAVRKDGFKDHPV
ILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKYKAIKKEILDEGDSDSNTDQGAGSS
EDEEEEDEEEEGEDEEGGQKVTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFAESQTKELCN
MILDCCAQQRTYEKFFGLLAGRFCMLKKEYMESFESIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSLP
WSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAINFF
TSIGLGGLTDELREHLKNTPKVIVAQKPEAEQKKPALTSSSSESSSASDSSDSESDSSESSSESSSDASD
SSSSSSTQSSTSGITAHSAKGTRKKRQGKARGEEVDKLARGHQALERRREGGREDQRHQEGRTERARSER
RRAQNSRDADWRDPLAKHIDDRSHENSHSRVGNGREQGSHREPEDRHGEPKKRRERRDSFSENEKQRSRN
QDSDNVRRKDRSKSRERSRRHSGHKGDDARCQNSAERRWEKPGRRPEQSRESKRSQDRRREKSPTTQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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