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Report for CCDS15541.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15541.1 Public Mus musculus 1 Mptx1 23 108 98 CCDS HistoryNCBI Gene:66289Re-query CCDS DB by CCDS ID:15541.1Re-query CCDS DB by GeneID:66289See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 15541.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027816.4 ENSMUSP00000027816.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027816.4Link to Ensembl Protein Viewer:ENSMUSP00000027816.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000027816Re-query CCDS DB by Protein ID:ENSMUSP00000027816
Original member NCBI NM_025470.3 NP_079746.1 Updated not alive Link to Nucleotide Sequence:NM_025470.3Link to Protein Sequence:NP_079746.1Re-query CCDS DB by Nucleotide ID:NM_025470Re-query CCDS DB by Protein ID:NP_079746
Current member NCBI NM_025470.4 NP_079746.1 Accepted alive Link to Nucleotide Sequence:NM_025470.4Link to Protein Sequence:NP_079746.1Re-query CCDS DB by Nucleotide ID:NM_025470Re-query CCDS DB by Protein ID:NP_079746Link to BLAST:NP_079746.1

Chromosomal Locations for CCDS 15541.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 174330573 174330636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 174332194 174332789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (660 nt):
ATGGAGAAGCTTATTGTGGGCATCCTGTTTCTCTCTGTTCTTTCAGGAAGTGTAGCAGAAACAGACATGA
AGGGAAAGGCATTTATTTTCCCTCAAGAATCATCCACTGCCTATGTGTCCCTGATACCGAAGGTGAGGAA
GTCACTGCAGAACTTCACTCTGTGTATGAAGACCTTCACAGACTTGACGCGCCCTTACAGCATCTTCTCC
TACAACACAAGAAACCAGGACAATGAGATTCTTCTCTTTGTGGAAAATATAGGAGAATACATGTTCTATG
TTGGGAATATGGTAGCCACTTTCAAAGCACCCACAAATCTTCCTGATCCGGCCCGTATCTGTGTGAACTG
GGAGTCTGGCTCTGGGATTGCAGAATTCTGGCTGAATGGAAAACCACTGGGGAGGAAAGGCTTGAAGAAG
GGATACACTGTGGGGGGTGATGCAATGATCACTCTAGGACAAGAGCAGGATTCCTATGGGGGAAATTTTG
ATGCAAAGCAATCCTTTGTTGGGGAGATATGGGATGTTTCCTTGTGGGACCATGTGGTCCCCCTAGAAAA
GGTATCAGACAGCTGTAACAATGGCAACCTTATAAACTGGCAAGCTCTTAATTATGAAGACAATGGCTAT
GTGGTGACTAAGCCCAAACTGTGGCCTTAA

Translation (219 aa):
MEKLIVGILFLSVLSGSVAETDMKGKAFIFPQESSTAYVSLIPKVRKSLQNFTLCMKTFTDLTRPYSIFS
YNTRNQDNEILLFVENIGEYMFYVGNMVATFKAPTNLPDPARICVNWESGSGIAEFWLNGKPLGRKGLKK
GYTVGGDAMITLGQEQDSYGGNFDAKQSFVGEIWDVSLWDHVVPLEKVSDSCNNGNLINWQALNYEDNGY
VVTKPKLWP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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