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Report for CCDS20234.1 (previous version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20234.1 Public Mus musculus 6 Mrpl35 21 106 86 CCDS HistoryNCBI Gene:66223Re-query CCDS DB by CCDS ID:20234.1Re-query CCDS DB by GeneID:66223See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Sequence IDs included in CCDS 20234.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member EBI ENSMUST00000065103 ENSMUSP00000066493 Accepted not alive Link to Ensembl Transcript Viewer:ENSMUST00000065103Link to Ensembl Protein Viewer:ENSMUSP00000066493Re-query CCDS DB by Nucleotide ID:ENSMUST00000065103Re-query CCDS DB by Protein ID:ENSMUSP00000066493
Original member Current member EBI OTTMUST00000057990 OTTMUSP00000028047 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000057990Link to Vega Protein Viewer:OTTMUSP00000028047Re-query CCDS DB by Nucleotide ID:OTTMUST00000057990Re-query CCDS DB by Protein ID:OTTMUSP00000028047
Original member Current member NCBI NM_025430.3 NP_079706.1 Accepted alive Link to Nucleotide Sequence:NM_025430.3Link to Protein Sequence:NP_079706.1Re-query CCDS DB by Nucleotide ID:NM_025430Re-query CCDS DB by Protein ID:NP_079706Link to BLAST:NP_079706.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079706.1 188 Q9CQL6 188 100% 0 0

Chromosomal Locations for CCDS 20234.1

Assembly GRCm38.p4 (GCF_000001635.24)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 71816099 71816287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 71817605 71817749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 71818669 71818858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6
6 71823716 71823758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6Link to Vega Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (567 nt):
ATGGCGGCTTCCATCTTCACGGGCGCCGTGAGAGCTGCCTCAGGAATATTTCGTCCCTTGAATGTCTTGG
CATCTTCAACCTATCGGAACTGCGCCAGGAATGCCTGTCTTAATTCTTCACTGTGCACCATTCATTTTAG
ACATATTCAGACATCAGTTGTTTCCTCTGCTCCAAGACTTGTCACATCTGTTGGACACCTGGCATATGGG
CATACCACAACAGTCCTTAATAGAGTGGCCACATTGGTTCCCAGTGTCCTGAAGCCACCAGTCAGAGCTC
TAACATACTGCAGCACACGGAAAGGCAAGAGAAAGACGGTAAAGTCGGTCGTGCATCGCTTCCTCCGACT
TCATTCTGGCCTTTGGCTAAGGAGAAAGGCTGGCTATAAGAAAAAATTATGGAAAAAGTCAACTGCAAGA
AAGAAGCGCTTGAGGGAATTTGTGTTCTGCAGCAAGACCCAGAGTAAACTCCTGGATAAAATGACGACAT
CTTTCTGGAAGAGGCGCAACTGGTACGCTGGCGATCCTTACCAGATGTACCACGATCGAACAAACCTACG
AGTATAG

Translation (188 aa):
MAASIFTGAVRAASGIFRPLNVLASSTYRNCARNACLNSSLCTIHFRHIQTSVVSSAPRLVTSVGHLAYG
HTTTVLNRVATLVPSVLKPPVRALTYCSTRKGKRKTVKSVVHRFLRLHSGLWLRRKAGYKKKLWKKSTAR
KKRLREFVFCSKTQSKLLDKMTTSFWKRRNWYAGDPYQMYHDRTNLRV


Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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