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SRX9912227: GSM5029370: Sham-Fat 10 (control)-H3K9ac; Mus musculus; ChIP-Seq
1 ILLUMINA (NextSeq 500) run: 35.1M spots, 2.6G bases, 954.7Mb downloads

Submitted by: NCBI (GEO)
Study: The effect of diet on H3K9-butyryl and H3K9-acetyl in the heart before and after transverse aortic constriction in C57Bl/6J mice
show Abstracthide Abstract
Mice (C57Bl/6J) that are fed increasing levels of dietary fat (0, 10, and 60 Kcal%) show a parallel increasing decline in global promoter-H3K9-butyryl (H3K9Bu), but none in promoter-H3K9-acetyl (H3K9ac), in the heart. Additionally, transverse aortic constriction (TAC) induces a further decline in H3K9Bu, compared to an increase in H3K9ac. Overall design: C57Bl/6J mice were fed either a fat-free (0 Kcal%, Fat 0), low-fat (10 Kcal%, Fat 10 or control), or high-fat (60 Kcal%, Fat 60 or HiFat) diet for 4 days before subjecting them to a sham or transverse aortic constriction (TAC) surgeries. The mice were maintained on the same diet for another week, before they were assessed by echocardiography, the hearts isolated, chromatin extracted , and subjected to anti-H3K9Bu and anti-H3K9ac ChIP-Seq
Sample: Sham-Fat 10 (control)-H3K9ac
SAMN17487030 • SRS8090145 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: NextSeq 500
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: SINGLE
Construction protocol: Nuclei were extracted from heart tissue, sonicated, and histone-DNA complexes were precipitated with anti-H3K9Bu or anti-H3K9ac (a pool of 3, each) Library was constructed by Active Motif (https://www.activemotif.com/)
Experiment attributes:
GEO Accession: GSM5029370
Links:
Runs: 1 run, 35.1M spots, 2.6G bases, 954.7Mb
Run# of Spots# of BasesSizePublished
SRR1350032035,117,1252.6G954.7Mb2021-05-13

ID:
12971722

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