U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX9641447: GSM4959937: Female medaka pituitary scRNA-seq; Oryzias latipes; RNA-Seq
4 ILLUMINA (NextSeq 500) runs: 165.8M spots, 20.6G bases, 8Gb downloads

Submitted by: NCBI (GEO)
Study: Characterization of hormone-producing cell types in the medaka pituitary gland using single-cell RNA-seq
show Abstracthide Abstract
The pituitary is the vertebrate endocrine gland responsible for the production and secretion of several essential peptide hormones. These, in turn, control many aspects of an animal's physiology and development, including growth, reproduction, homeostasis, metabolism and stress responses. In teleost fish, each hormone is presumably produced by a specific cell type. However, key details on the regulation of, and communication between these cell types are still poorly understood. We have therefore generated gene expression profiles for 2592 and 3804 individual cells from the pituitaries of female and male adult medaka (Oryzias latipes), respectively. Based on expression profile clustering, we define 15 and 16 distinct cell types in the female and male pituitary, respectively, of which nine are involved in the exclusive production of a single peptide hormone. Collectively, our data provide a high-quality reference for studies on pituitary biology and the regulation of hormone production, both in fish and in vertebrates in general. Overall design: Single cell sequencing (scRNA-seq) of the medaka pituitary.
Sample: Female medaka pituitary scRNA-seq
SAMN17016105 • SRS7841042 • All experiments • All runs
Organism: Oryzias latipes
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Pituitaries were collected from 24 female and 23 male adult medaka of approximately 8 months old. pituitaries cells were dissociated as described in Ager-Wick, E. et al (2018). Briefly, fresh pituitaries were put in an Eppendorf tube with modified PBS (phosphate buffered saline, pH 7.75, 0.05% bovine serum albumin) and kept on ice until processing. Pituitaries were treated with 0.1% w/v trypsin type II S for 30 minutes at 26 °C, with 0.1% w/v trypsin inhibitor type I S for 20 minutes at 26 °C, and subsequently mechanically dissociated using a glass pipette. 10x Genomics Chromium Single Cell 3′ Reagents Kit v2
Experiment attributes:
GEO Accession: GSM4959937
Links:
Runs: 4 runs, 165.8M spots, 20.6G bases, 8Gb
Run# of Spots# of BasesSizePublished
SRR1320827650,094,7976.2G2.4Gb2021-06-07
SRR1320827744,312,8665.5G2.1Gb2021-06-07
SRR1320827839,411,0964.9G1.9Gb2021-06-07
SRR1320827931,999,8014G1.5Gb2021-06-07

ID:
12603963

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...