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SRX9532364: GSM4915168: CH12_LAM-HTGTS_C13_rep2; Mus musculus; OTHER
1 OXFORD_NANOPORE (MinION) run: 724,195 spots, 56.8M bases, 49.6Mb downloads

Submitted by: NCBI (GEO)
Study: DNA replication timing directly regulates the frequency of oncogenic chromosomal translocations
show Abstracthide Abstract
Chromosomal translocations result from the joining of DNA double-strand breaks (DSBs) and frequentlycause cancer. However, the steps linking DSB formation to DSB ligation remain undeciphered. Wereport that DNA replication timing (RT) directly regulates lymphomagenicMyctranslocations duringantibody maturation in B cells downstream of DSBs and independently of DSB frequency. Depletion ofminichromosome maintenance complexes alters replication origin activity, decreases translocations,and deregulates global RT. Ablating a single origin atMyccauses an early-to-late RT switch, loss oftranslocations, and reduced proximity with the immunoglobulin heavy chain (Igh) gene, its majortranslocation partner. These phenotypes were reversed by restoring early RT. Disruption of early RT alsoreduced tumorigenic translocations in human leukemic cells. Thus, RT constitutes a general mechanismin translocation biogenesis linking DSB formation to DSB ligation. Overall design: LAM-HTGTS in LacZ and Mcm infected CH12 cells, C13 deltaori and C23 deltaori clones, C13 restored and C2 restored clones using a Myc-bait; LacZ and Mcm infected CH12 cells, C13 deltaori and C13 restored clones using a Irf2bp2-bait
Sample: CH12_LAM-HTGTS_C13_rep2
SAMN16837316 • SRS7738886 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: MinION
Strategy: OTHER
Source: GENOMIC
Selection: other
Layout: SINGLE
Construction protocol: Genomic DNA was extracted and c-Myc genomic region was biotin isolated and PCR enriched Libraries were prepared following the nanopore library preparation protocol Ligation Sequencing Kit SQK-LSK128
Experiment attributes:
GEO Accession: GSM4915168
Links:
Runs: 1 run, 724,195 spots, 56.8M bases, 49.6Mb
Run# of Spots# of BasesSizePublished
SRR13086165724,19556.8M49.6Mb2022-11-10

ID:
12455472

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