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SRX9358315: GSM4859407: s8_20ngFGF9; Mus musculus; RNA-Seq
4 ILLUMINA (NextSeq 500) runs: 34.3M spots, 2.6G bases, 965.5Mb downloads

Submitted by: NCBI (GEO)
Study: FGF9 Promotes Mouse Spermatogonial Stem Cell Proliferation Mediated by p38 MAPK Signaling [bulk RNA-seq]
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Objectives: Fibroblast growth factor 9 (FGF9) is expressed by somatic cells in the seminiferous tubules, yet little information exists about its role in regulating spermatogonial stem cells (SSCs). Materials and Methods: Fgf9 overexpression lentivirus was injected into mouse testes, and PLZF immunostaining was performed to investigate the effect of FGF9 on spermatogonia in vivo. Effect of FGF9 on SSCs was detected by transplanting cultured germ cells into tubules of testes. RNA-seq of bulk RNA and single-cell was performed to explore FGF9 working mechanisms. SB203580 was used to disrupt p38 MAPK pathway. p38 MAPK protein expression was detected by western blot and qPCR was performed to determine different gene expression. Small interfering RNA (siRNA) was used to knock down Etv5 gene expression in germ cells. Results: Overexpression of Fgf9 in vivo resulted in arrested spermatogenesis and accumulation of undifferentiated spermatogonia. Exposure of germ cell cultures to FGF9 resulted in larger numbers of SSCs over time. Inhibition of p38 MAPK phosphorylation negated the SSC growth advantage provided by FGF9. Etv5 and Bcl6b gene expression was enhanced by FGF9 treatment. Gene knockdown of Etv5 disrupted the growth effect of FGF9 in cultured SSCs along with downstream expression of Bcl6b. Conclusions: Taken together, this data indicates that FGF9 is an important regulator of SSC proliferation, operating through p38 MAPK phosphorylation and upregulating Etv5 and Bcl6b in turn. Overall design: bulk RNA seq: 4 biological replicates of cultured germ cells (labelled s6, s7, s8 and s9) of each of the following treatments: control (0ng/ml FGF), 1ng/ml FGF9, 20ng/ml FGF9 and 1ng/ml FGF2)
Sample: s8_20ngFGF9
SAMN16547524 • SRS7581253 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: RNA was extracted using miRNAeasy Mini Kit (QIAGEN, Germany) mRNA libraries were created using TruSeq Stranded mRNA kit (Illumina, USA)
Experiment attributes:
GEO Accession: GSM4859407
Links:
Runs: 4 runs, 34.3M spots, 2.6G bases, 965.5Mb
Run# of Spots# of BasesSizePublished
SRR128932258,755,625659.1M246.1Mb2020-10-26
SRR128932268,568,530645M239.3Mb2020-10-26
SRR128932278,550,353643.7M241.8Mb2020-10-26
SRR128932288,451,552636.2M238.2Mb2020-10-26

ID:
12221983

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