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SRX9349898: GSM4850931: Chuong541: Ac WT dorsal epidermis RNA-seq; Acomys cahirinus; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 64.4M spots, 4.9G bases, 1.9Gb downloads

Submitted by: NCBI (GEO)
Study: Symmetry breaking of tissue mechanics in wound induced hair follicle regeneration [bulk RNA-seq]
show Abstracthide Abstract
Tissue regeneration is a process that recapitulates the molecular and mechanical aspects of development and evolution. We use the wound-induced hair neogenesis (WIHN) model to investigate the mechanical and molecular responses of the laboratory (Mus) and African spiny (Acomys) mice. Laboratory and spiny mice showed an opposite trend of spatiotemporal morphogenetic field for WIHN during wound healing, and wound stiffness gradient across the whole wound bed predicated pattern of hair formation. Using bulk and single-cell RNA-seq analysis and K14-Cre-Twist1 transgenic mice, we identified the central role of the Twist1 pathway as the mediator of epidermal-dermal interaction and the emergence of periodic hair primordia. Lastly, we generated a Turing model with an underlying measure of stiffness to support a two-scale tissue mechanic model to explain the setup of a morphogenetic field from a wound bed (mm scale) or periodically arranged hair primordia from a morphogenetic field (µm scale). Delineating the common and distinct chemo-mechanical events during regenerative wound healing between laboratory and African spiny mice reveal its evo-devo advantages, which provide new perspectives for regenerative medicine. Overall design: bulk RNA-Seq for epidermal and dermal tissues from lab mouse and spiny mouse
Sample: Chuong541: Ac WT dorsal epidermis RNA-seq
SAMN16523302 • SRS7572896 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: TRIzol Illumina TruSeq RNA sample Prep kit v2 / Illumina TruSeq Stranded mRNA library prep kit
Experiment attributes:
GEO Accession: GSM4850931
Links:
Runs: 1 run, 64.4M spots, 4.9G bases, 1.9Gb
Run# of Spots# of BasesSizePublished
SRR1288404464,442,2814.9G1.9Gb2021-02-19

ID:
12209622

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