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SRX9345927: GSM4849248: TREAT_HIGH_2; Mus musculus; miRNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 11.5M spots, 584.1M bases, 173Mb downloads

Submitted by: NCBI (GEO)
Study: Identification of translational microRNA biomarker candidates for nano-polystyrene induced brain injury using next-generation sequencing
show Abstracthide Abstract
The exposure to nano-plastics affects mammalian neurotoxic hazard characterization remains to be determined. Our aim was to investigate the neurotoxicity of nano-plastics in rodents. Animals were randomly divided into two groups: a control group and 50 mg/kg body weight PS NPs treatment groups. Before treatment, animals were fasted overnight. PS NPs were suspended into waters, vigorously stirred. The PS NPs via oral gavage once per day and for 6 months. The mice were treated with water in control group. We found that exposure to PS NPs caused cognitive decline. PS NPs exposure influenced the prefrontal cortex cells with more pathological alteration with increasing dosage. High-throughput RNA sequencing was conducted to explore miRNA expression in prefrontal cortex. Twenty-nine differentially expressed miRNAs were detected, including 12 upregulated and 17 downregulated miRNAs. This finding provided a reference for further studies on the development mechanisms of ncRNA during cognitive dysfunction. Overall design: Mice exposure PS NPs for half year and identified of translational microRNA
Sample: TREAT_HIGH_2
SAMN16517700 • SRS7568409 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 2500
Strategy: miRNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: SINGLE
Construction protocol: Total RNA was extracted using Trizol reagent (Invitrogen, CA, USA) following the manufacturer's procedure Approximately 5 µg of total RNA were used to prepare nine small RNA librariesaccording to the protocol of TruSeq Small RNA Sample Prep Kits (Illumina, San Diego, CA, USA). And then the libraries were sequenced by Illumina Hiseq 2500 at the LC-BIO following the vendor's recommended protocol. Raw reads were subjected to an in-house program, ACGT101-miR (LC Sciences, Houston, Texas, USA) to remove adapter dimers, junk, low complexity, common RNA families (rRNA, tRNA, snRNA, snoRNA) and repeats.
Experiment attributes:
GEO Accession: GSM4849248
Links:
Runs: 1 run, 11.5M spots, 584.1M bases, 173Mb
Run# of Spots# of BasesSizePublished
SRR1287995111,452,094584.1M173Mb2023-10-02

ID:
12205339

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