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SRX8726232: GSM4670335: 2_S18: Infected 4h replicate 1; Eimeria tenella; Gallus gallus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 23.3M spots, 5.9G bases, 2.3Gb downloads

Submitted by: NCBI (GEO)
Study: Dual RNA-seq transcriptome analysis of chicken macrophage-like cells (HD11) infected in vitro with Eimeria tenella
show Abstracthide Abstract
In order to elucidate the infection mechanisms of Eimeria tenella and the chicken immune response, chicken macrophage cell cultures of cell line HD-11 were infected with Eimeria tenella strain Hougton sporozoites. Samples were taken at 0, 2, 4, 12, 24, 48 and 72 hours post-infection and, purified and mRNA sequenced. A dual-RNA seq analysis was carried out, comparing the expression of infected chicken macrophages with uninfected ones at the same time points post-infection and comparing E. tenella samples during the infection with a sample of pure sporozoites. The results show a variety of response signals in the chicken, both previously known and unknown, as well as a clear role for different sets of SAG and MIC proteins for sporozoites and merozoites of E. tenella Overall design: mRNA profiles of chicken macrophage cells, both uninfected and infected with Eimeria tenella sporozoites
Sample: 2_S18: Infected 4h replicate 1
SAMN15524895 • SRS7001084 • All experiments • All runs
Organism: Eimeria tenella
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: For RNA isolation 1 ml of HD11 cell lysate in TRIzol was used and RNA was extracted using chloroform according to the TRIzol manufacturer's protocol. The Isolated RNA was subsequently treated with DNAse (TURBO™ DNase, 2U/ul, ThermoFisher Scientific) according to the manufacturers protocol and further purified using reagents and the “RNA cleanup” protocol of the RNeasy Mini kit (Qiagen) protocol. RNA concentration and quality was then assessed using the Agilent RNA 6000 Nano kit on a 2100 Bioanalyzer Instrument (Agilent) and the RNA stored at -70°C until further analysis. Sequencing libraries were prepared from 0.12 – 0.5 μg total RNA using the TruSeq stranded mRNA library preparation kit (Cat# RS-122-2101/2102, Illumina Inc.) including polyA selection. The library preparation was performed according to the manufacturers' protocol (#15031047). Sequencing: HiSeq2500, paired-end 125bp read length, v4 sequencing chemistry.
Experiment attributes:
GEO Accession: GSM4670335
Links:
Runs: 1 run, 23.3M spots, 5.9G bases, 2.3Gb
Run# of Spots# of BasesSizePublished
SRR1221564923,321,3035.9G2.3Gb2021-04-29

ID:
11351458

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