GSM4646695: H3K4me3 ChIP shctrl 3; Mus musculus; ChIP-Seq - SRA

SRX8639429: GSM4646695: H3K4me3 ChIP shctrl 3; Mus musculus; ChIP-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 15.5M spots, 791.4M bases, 496.1Mb downloads

Submitted by: NCBI (GEO)

Study: EZH2-GATA6 axis in Pancreatic ductal adenocarcinoma [ChIP-Seq]

PRJNA643358 • SRP269499 • All experiments • All runs

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We conducted ChIP-seq experiments to investigate the role of EZH2 in Pancreatic ductal adenocarcinoma Overall design: ChIP-seq profiles for EZH2 in NKC cells (mouse PDAC cell line carrying pancreas specific-Kras mutation (KrasG12D) and constitutive activation of NFATc1).ChIP-seq profiles for H3K27me3 and H3K4me3 in NKC cells transfected with shRNA control and shRNA EZH2. Three replicated per condition were analysed.

Sample: H3K4me3 ChIP shctrl 3

SAMN15403458 • SRS6924207 • All experiments • All runs

Organism: Mus musculus

Library:

Instrument: Illumina HiSeq 2000

Strategy: ChIP-Seq

Source: GENOMIC

Selection: ChIP

Layout: SINGLE

Construction protocol: Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. ChIP libraries were prepared for sequencing using standard Illumina protocols

Experiment attributes:

GEO Accession: GSM4646695

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 15.5M spots, 791.4M bases, 496.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR12116937	15,518,003	791.4M	496.1Mb	2020-10-02

ID:: 11227525

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Sequence Read Archive

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