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SRX842705: GSM1585282: Fibroblasts newborn male P4; Callithrix jacchus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 30.4M spots, 1.5G bases, 1.1Gb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Non-viral generation of marmoset monkey iPS cells by a six-factor-in-one-vector approach
show Abstracthide Abstract
The analysis compares primary fibroblasts initially used for reprogramming, established marmoset ES cells and a marmoset iPS cell line which was generated witha non-viral approach using a six-factor-in-one-vector approach Overall design: Cells were grown under standard conditions for marmoset pluripotent stem cells and primary fibroblasts without additional treatment. For each cell type at least four independent cell preparations were used.
Sample: Fibroblasts newborn male P4
SAMN03284346 • SRS818882 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: RNA was isolated using Trizol Reagent according to instructions Library preparation for RNA-Seq was performed using the TruSeq RNA Sample Preparation Kit (Illumina, Cat. N°RS-122-2002) starting from 500 ng of total RNA according to Illumina's instructions. Accurate quantitation of cDNA libraries was performed by using the QuantiFluor™ dsDNA System (Promega). The size range of final cDNA libraries was determined applying the DNA 1000 chip on the Bioanalyzer 2100 from Agilent (280 bp). The purified DNA was captured on an Illumina flow cell for cluster generation. Libraries were sequenced on the HiSeq2000 following the manufacturer's protocols.
Experiment attributes:
GEO Accession: GSM1585282
Links:
External link:
Runs: 1 run, 30.4M spots, 1.5G bases, 1.1Gb
Run# of Spots# of BasesSizePublished
SRR175844630,369,7551.5G1.1Gb2015-04-08

ID:
1192536

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