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SRX8342461: GSM4552748: P7_Notch.replicate2; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 18M spots, 3.7G bases, 1.9Gb downloads

Submitted by: NCBI (GEO)
Study: Gene expression profile of primary CLL cells transduced with a retrovirus expressing mutated NOTCH1
show Abstracthide Abstract
In CLL, NOTCH1 is the most commonly mutated gene at diagnosis and it is associated with a poor outcome. The mechanisms underlying how NOTCH1 contributes to disease progression, resistance to treatment and Richter's transformation remain largely unknown. The main goal of this study is to compare the gene expression profile of primary CLL cells transduced with the intracellular part of NOTCH1 lacking of the PEST domain vs cells transduced with an empty vector. Additionally, patients with the Trisomy 12 abnormality are included in this study to clarify the role of the mutations in this specific sub-group of CLL patients that are strongly associated with NOTCH1 mutations. Overall design: primary CLL cells from 13 patients were isolated through cell sorting 4 days post transdusction with a NOTCH1?PEST or an empty retroviral vector
Sample: P7_Notch.replicate2
SAMN14923917 • SRS6660410 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was extracted post cell sorting using the RNeasy Plus Micro Kit (Qiagen) HiSeq4000
Experiment attributes:
GEO Accession: GSM4552748
Links:
Runs: 1 run, 18M spots, 3.7G bases, 1.9Gb
Run# of Spots# of BasesSizePublished
SRR1179041018,025,6353.7G1.9Gb2022-11-10

ID:
10851061

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