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SRX7875152: GSM4399904: P7_2_mPFC; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 153.7M spots, 15.7G bases, 4.8Gb downloads

Submitted by: NCBI (GEO)
Study: Identification of Natural Antisense Transcripts in Mouse Brain and Their Association with Autism Spectrum Disorder Risk Genes
show Abstracthide Abstract
We performed strand-specific, deep RNA sequencing to profile expression of sense and antisense reads with a focus on 100 ASD-related genes in medial prefrontal cortex (mPFC) and striatum across mouse development (P7, P14 and P56). Using de novo transcriptome assembly, we generated a comprehensive long non-coding RNA (lncRNA) transcriptome. We conducted BLAST analyses to compare the resultant transcripts with the human genome and identified transcripts with high sequence similarity and coverage. Overall design: Strand specific deep RNA sequencing of medial prefrontal cortex (mPFC) and striatum across mouse development.
Sample: P7_2_mPFC
SAMN14336222 • SRS6286010 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA including miRNA fractions were isolated using Qiagen miRNeasy mini kit according to the manufacturer's protocol. RNA integrity was assessed with an Agilent 2100 Bioanalyzer using an Agilent Bioanalyzer 6000 Nano kit. Input of 400ng of total RNA was used as starting material for each sample and libraries were prepared using 99 TruSeq Stranded Total RNA LT with Ribo-Zero Gold Depletion Kit from Illumina. Quantification was performed using KAPA Library Quantification Kit and the average size of 300 bp was determined by using a High Sensitivity DNA Kit. The libraries were pooled and diluted to 13 pM to load on an Illumina HiSeq 2500 Instrument.
Experiment attributes:
GEO Accession: GSM4399904
Links:
Runs: 1 run, 153.7M spots, 15.7G bases, 4.8Gb
Run# of Spots# of BasesSizePublished
SRR11268520153,651,82615.7G4.8Gb2021-01-25

ID:
10304855

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