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SRX7857096: GSM4386287: Ythdc1_cKO_ESC#1_+4OHT.rep2; Mus musculus; RNA-Seq
1 ILLUMINA (HiSeq X Ten) run: 27.5M spots, 8.2G bases, 3.1Gb downloads

Submitted by: NCBI (GEO)
Study: High throughput sequencing for YTHDC1 binding RNAs [RNA-seq]
show Abstracthide Abstract
N6-methyladenoisne (m6A) plays critical roles in many biological processes. However, the function of m6A at the early phase of mammalian development remains poorly understood. Here we show that m6A reader Ythdc1 is required for the proliferation of mouse embryonic stem cells (mESCs) in an m6A-dependent manner and its deletion resets mESCs back to a 2C-like state. Overall design: We analyzed the transcriptome expression and epigenetic profiles after YTHDC1 Knock out in mouse embyronic stem cells
Sample: Ythdc1_cKO_ESC#1_+4OHT.rep2
SAMN14307353 • SRS6266188 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: HiSeq X Ten
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: total RNA Total RNAs were extracted as described above. The VAHTS Total RNA-seq (H/M/R) Library Prep Kit for Illumina (VAHTS, #NR603) was used for RNA library preparation. In brief, 1 μg total RNAs were hybridized with the rRNA probe (H/M/R) and digested by RNase H to remove ribosomal RNAs. After DNase I digestion, the ribosomal-depleted RNAs were fragmented at 94°C for 8min. Then the first-strand and second-strand cDNAs were synthesized successively using the provided reagents. The cDNA was purified by VAHTS DNA Clean Beads (VAHTS, #NR411), followed by end repaired, dA-tailing, adapter ligation, and second strand cDNA digestion. After two-round of purification, the cDNAs was PCR-amplified and purified by VAHTS DNA Clean Beads. High- throughput sequencing was performed using Illumina HiSeq Xten (Illumina) platform with PE150 (pair-end sequencing, 150 bp reads).
Experiment attributes:
GEO Accession: GSM4386287
Links:
Runs: 1 run, 27.5M spots, 8.2G bases, 3.1Gb
Run# of Spots# of BasesSizePublished
SRR1124572727,467,9568.2G3.1Gb2021-01-25

ID:
10283184

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