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SRX7719982: GSM4314099: single cells_Control A; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 172.1M spots, 21.5G bases, 9.2Gb downloads

Submitted by: NCBI (GEO)
Study: Single-cell RNA-seq: INCB059872 in wild-type murine bone marrow
show Abstracthide Abstract
INCB059872 is a selective irreversible inhibitor of Lysine-Specific Demethylase 1 (LSD1) that is in phase 1 clinical trials in hematopoietic malignancies. Mice treated with INCB059872 had reduced platelet counts within 4 days of treatment. Here, we used single-cell RNA-seq to study the effects of INCB059872 on hematopoietic progenitor populations within wild-type murine bone marrow. Our results showed that INCB059872 triggered accumulation of megakaryocyte early progenitor cells with gene expression hallmarks of stem cells, which may begin to explain the thrombocytopenia observed in patients treated with LSD1 inhibitors. Overall design: Single-cell RNA-seq of lineage-negative bone marrow from mice treated with LSD1i for 0, 4, or 6 days (3 mice per group)
Sample: single cells_Control A
SAMN14101649 • SRS6146096 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Bone marrow was harvested from femurs and tibias and stained with BD Pharmingen Biotin Mouse Lineage Panel and streptavidin-PacBlue. Zombie-NIR Fixable Viability Dye was added to each sample at 1:1000 dilution before sorting alive lineage-negative population (PacBlue-/NIR-). Sorted cells were submitted for single-cell RNA-seq using 10X Genomics Chromium Controller. Barcoded cDNA libraries were prepared according to instructions from 10X Genomics.
Experiment attributes:
GEO Accession: GSM4314099
Links:
Runs: 1 run, 172.1M spots, 21.5G bases, 9.2Gb
Run# of Spots# of BasesSizePublished
SRR11080943172,091,98821.5G9.2Gb2020-05-28

ID:
10090812

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