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SRX7692536: GSM4301360: neonatal pancreatic islets, S35170_a; Sus scrofa; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 4.2M spots, 322.3M bases, 126.8Mb downloads

Submitted by: NCBI (GEO)
Study: Hepatokine Fetuin-A disrupts functional maturation of pancreatic ß-cells
show Abstracthide Abstract
Neonatal beta-cells undergo a maturation process to acquire glucose responsiveness. We hypothesize that in later life, a partial reversal of this maturation might promote beta-cell dysfunction. We previously ascertained that fetuin-A, a fetal glycoprotein downregulated at birth but increasingly secreted when fatty liver develops, inhibits insulin secretion. Here, we evaluate fetuin-A's impact on beta-cell maturation. In vitro maturation of neonatal porcine islet cell clusters (NICCs) promoted expression of beta-cell markers and TGFBR/SMAD signaling. Fetuin-A reduced both functional and proliferative gene expression and SMAD phosphorylation. Consequently, fetuin-A impaired glucose- and forskolin-dependent secretion, and reduced adaptive beta-cell proliferation. In adult human islets, fetuin-A abolished glucose responsiveness, diminished SMAD phosphorylation and downregulated functional and proliferative genes. Our findings suggest that perinatal decline of fetuin-A relieves TGFBR signaling in neonatal beta-cells, thereby facilitating the onset of postnatal maturation. However, this program remains revocable during adulthood, since fatty liver-derived fetuin-A reverses beta-cells' maturity, conferring them a neonatal-like phenotype and contributing to their failure. Overall design: 24 samples derived from porcine neonatal pancreatic islets. The neonatal islets were subjected to in vitro maturation for 10 days. Maturation was conducted in standard culture medium or in the presence of five different treatment conditions. The experiment was replicated in four idependent islet preparations.The immature islets (islets at culture day 6; HSA/day 6) represent the control for the maturated islets in standard culture medium (islets at culture day 10; HSA/day 10). The maturated islet in standard medium (HSA/day 10) represents the control for the different treatment conditions (fetuin-A, HSA + SB, HSA + LDN and HSA + SB + LDN) during the maturation process.
Sample: neonatal pancreatic islets, S35170_a
SAMN14057297 • SRS6118625 • All experiments • All runs
Organism: Sus scrofa
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total cellular RNA was extracted from porcine islets using a commercial kit for RNA isolation (Macherey Nagel RNA isolation kit). The mRNA was isolated from 0.2 ug total RNA with an integrity number of ≥ 9 by poly-dT enrichment using the NEBNext Poly(A) mRNA Magnetic Isolation Module in accordance with the manufacturer's instructions. Final elution was done in 15 µl 2x first strand cDNA synthesis buffer (NEBnext, NEB). Samples were then directly subjected to the workflow for strand specific RNA-Seq library preparation (Ultra Directional RNA Library Prep II, NEB). Following ligation, adapters were depleted by a 1X XP bead purification (Beckman Coulter). Indexing was carried out during the following PCR enrichment (15 cycles, 65 °C).Following two further bead based purifications (1X XP beads) libraries were quantified using Qubit dsDNA HS Assay Kit (Invitrogen), equimolarly pooled and used for 75bp single read sequencing on Illumina NextSeq 500 resulting in an average 28 Mio sequenced fragments per sample.
Experiment attributes:
GEO Accession: GSM4301360
Links:
Runs: 1 run, 4.2M spots, 322.3M bases, 126.8Mb
Run# of Spots# of BasesSizePublished
SRR110407684,240,934322.3M126.8Mb2020-12-07

ID:
10040843

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