GSM4257747: v16a_h3k27ac_hic_rep1; Homo sapiens; Hi-C - SRA

SRX7528572: GSM4257747: v16a_h3k27ac_hic_rep1; Homo sapiens; Hi-C
1 ILLUMINA (Illumina NovaSeq 6000) run: 472M spots, 141.6G bases, 41.3Gb downloads

Submitted by: NCBI (GEO)

Study: CRISPRi screen of prostate cancer associated risk cis-regulatory elements [Hi-C]

PRJNA600239 • SRP240924 • All experiments • All runs

show Abstracthide Abstract

Prostate cancer (PCa) associated risk SNPs are enriched in cis-regulatory elements (CREs). In this study, we screened 260 CREs that contain at least one PCa risk SNP for essentiality in V16A, 22Rv1 and A549 cells. We tiled the CREs and 14 control regions using 5,873 sgRNAs. Overall design: Hi-C in V16A and 22Rv1 cells.

Sample: v16a_h3k27ac_hic_rep1

SAMN13810025 • SRS5967920 • All experiments • All runs

Organism: Homo sapiens

Library:

Instrument: Illumina NovaSeq 6000

Strategy: Hi-C

Source: GENOMIC

Selection: other

Layout: PAIRED

Construction protocol: ARIMA-HIC kit Libraries were prepared following ARIMA-HIC protocol and the hyper prep kit illumina from Kapa Biosystems (#KK8500) Truseq index from illumina (cat 20015960)

Experiment attributes:

GEO Accession: GSM4257747

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 472M spots, 141.6G bases, 41.3Gb

Run	# of Spots	# of Bases	Size	Published
SRR10858471	472,007,961	141.6G	41.3Gb	2020-05-05

ID:: 9839604

SRA

Sequence Read Archive

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