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SRX7098820: GSM4148179: RNA_WT_R2; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 21.3M spots, 1.1G bases, 466.2Mb downloads

Submitted by: NCBI (GEO)
Study: Huntington's disease as a lamin B1 nuclear envelopathy
show Abstracthide Abstract
Lamins, the major structural proteins within the nuclear lamina, are crucial for the functionality of cellular nucleus and their alterations are involved in the so-called laminopathies. We previously found that Huntington's disease (HD), a hereditary neurodegenerative disorder caused by an expansion of a CAG repeat in the huntingtin (htt) gene, courses with increased lamin B protein levels in specific brain regions in both mouse models and patients. We now show that these changes are mostly restricted to lamin B1, occur in striatal medium-sized spiny neurons and CA1 hippocampal neurons, and are accompanied by altered nuclear morphology, nucleocytoplasmic transport disruption and un-structuring of lamin-associated chromatin domains. Normalization of lamin B1 levels by betulinic acid administration in the R6/1 mouse model of HD results in beneficial restoring of nuclear lamina homeostasis and prevention of motor and cognitive dysfunction, opening a window for a new therapeutic approach for HD and other B1-type laminophaties. Overall design: ChIP-seq (36 samples), RNA-seq (18 samples) and ATAC-seq (6 samples) of 30-week-old WT and R6/1 mice hippocampus. WT means Wild-type mice and R6/1 means R6/1 Huntington's disease transgenic mice (PubMed ID 8898202)
Sample: RNA_WT_R2
SAMN13191138 • SRS5611082 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: RNA-seq: RNA was isolated from 9 independent biological replicates for each genotype using the Qiagen RNeasy Plus Kit according to the manufacturer's instructions. Quality assessment was performed using Bioanalyser eukaryiotic total RNA nano series II chip and all samples achieved a RNA integration number (RIN) between 9-10. Libraries were prepared from 9 biological replicates of each condition using the Truseq Stranded mRNA Library Prep Kit following manufacturer's instructions and sequenced using the HiSeq-2500 sequencing platform. Libraries were prepared according to Illumina instructions.
Experiment attributes:
GEO Accession: GSM4148179
Links:
Runs: 1 run, 21.3M spots, 1.1G bases, 466.2Mb
Run# of Spots# of BasesSizePublished
SRR1039859121,302,4561.1G466.2Mb2020-11-10

ID:
9337668

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