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SRX7018649: GSM4128696: Bone marrow stromal cells, S1213; Homo sapiens; RNA-Seq
2 ILLUMINA (Illumina HiSeq 4000) runs: 69.5M spots, 3.5G bases, 1.3Gb downloads

Submitted by: NCBI (GEO)
Study: Multi-Parameter Analysis of Biobanked Human Bone Marrow Stromal Cells Shows Little Influence for Donor Age and Mild Comorbidities on Phenotypic and Functional Properties
show Abstracthide Abstract
Heterogeneous populations of human bone marrow-derived stromal cells (BMSC) are among the most frequently tested cellular therapeutics for treating degenerative and immune disorders, which occur predominantly in the aging population. Currently, it is unclear whether advanced donor age and commonly associated comorbidities affect the properties of ex vivo-expanded BMSCs. Thus, we stratified cells from adult and elderly donors from our biobank (n = 10 and n = 13, mean age 38 and 72 years, respectively) and compared their phenotypic and functional performance, using multiple assays typically employed as minimal criteria for defining multipotent mesenchymal stromal cells (MSCs).We found that BMSCs from both cohorts meet the standard criteria for MSC, exhibiting similar morphology, growth kinetics, gene expression profiles, and pro-angiogenic and immunosuppressive potential and the capacity to differentiate toward adipogenic, chondrogenic, and osteogenic lineages.We found no substantial differences between cells from the adult and elderly cohorts. As positive controls, we studied the impact of in vitro aging and inflammatory cytokine stimulation. Both conditions clearly affected the cellular properties, independent of donor age. We conclude that in vitro aging rather than in vivo donor aging influences BMSC characteristics. Overall design: RNA-Seq transcriptome analysis of human bone marrow stromal cells at different passages from healthy and diabetic donors, with and without stimulation
Sample: Bone marrow stromal cells, S1213
SAMN13054562 • SRS5539776 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA was extracted by using the Qiagen RNeasy Plus Mini Kit (Qiagen), according to the manufacturer's instructions. Poly-(A)-selection was performed utilizing the NEBNext Poly(A)mRNA Magnetic Isolation Module (NEB) according to the manufacturers requirements. mRNA libraries were prepared with the NEBNext Ultra RNA Library Prep Kit for Illumina (NEB). All libraries were analyzed with the Agilent DNA 1000 Kit and quantified using the Qubit® dsDNA BR Assay Kit (ThermoFisher). After equimolar pooling all samples were sequenced on an Illumina HiSeq system with High Output chemistry v4 (50 cycles, single-read)
Experiment attributes:
GEO Accession: GSM4128696
Links:
Runs: 2 runs, 69.5M spots, 3.5G bases, 1.3Gb
Run# of Spots# of BasesSizePublished
SRR1030733934,466,8721.8G638Mb2019-11-01
SRR1030734035,035,9751.8G644.5Mb2019-11-01

ID:
9221908

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