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SRX6874254: GSM4086306: I-WT-2; Oryza sativa; Pyricularia oryzae; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 14.1M spots, 2.9G bases, 1.1Gb downloads

Submitted by: NCBI (GEO)
Study: Phosphate excess increases susceptibility to pathogen infection in rice
show Abstracthide Abstract
Phosphorus (P) is an essential nutrient for plant growth and productivity. Due to soil fixation, however, phosphorus availability in soil is rarely sufficient to sustain high crop yields. Fertilizers are widely used to circumvent the limited bioavailability of phosphate (Pi) which led to a scenario of excessive soil P in agricultural soils. Whereas adaptive responses to Pi deficiency have been deeply studied, less is known about how plants adapt to Pi excess and how Pi excess might affect disease resistance. Here, we show that high Pi fertilization in rice plants, and subsequent Pi accumulation in leaves, enhances susceptibility to infection by Magnaporthe oryzae, the causal agent of the rice blast disease. Equally, MIR399f overexpression causes an increase in Pi content in rice leaves which results in enhanced susceptibility to M. oryzae. During pathogen infection, a weaker activation of defense-related genes occurs in rice plants accumulating Pi in leaves, a response that is in agreement with the phenotype of blast susceptibility observed in these plants. These data support that Pi, when in excess, compromises defense mechanisms in rice while demonstrating that miR399 functions as a negative regulator of rice immunity. The two signaling pathways, Pi signaling and defense signaling, must operate in a coordinated manner in controlling disease resistance. This information provides a basis to understand the molecular mechanisms involved in immunity in rice plants grown under a high Pi fertilization regime, an aspect that should be considered in management of the rice blast disease Overall design: 12 samples in total: 1 wild-type (WT) and 2 miR399f overexpressing lines (L4, L20) with 2 treatments (Control, Infected), 2 biological replicates each. Samples are: C-WT, C-L4, C-L20 (Control); I-WT, I-L4, I-L20 (Infected)
Sample: I-WT-2
SAMN12788358 • SRS5410161 • All experiments • All runs
Organism: Oryza sativa
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was extracted with the Maxwell 16 LEV Plant RNA Kit (Promega) following manufacturer's instructions. Indexed libraries prepared from 1ug purified RNA with TruSeq Stranded mRNA Sample Prep Kit (Illumina). Samples pooled; each index-tagged sample present in equimolar amounts (final concentration of pooled samples at 2nm). Pooled samples subjected to cluster generation and sequencing using Illumina Hseq 2500. 2x100 paired-ennd at final concentration of 8pmol.
Experiment attributes:
GEO Accession: GSM4086306
Links:
Runs: 1 run, 14.1M spots, 2.9G bases, 1.1Gb
Run# of Spots# of BasesSizePublished
SRR1014870414,121,2072.9G1.1Gb2020-03-16

ID:
9045845

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