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SRX6850553: GSM4079646: shCTRL-C3; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 25M spots, 7.6G bases, 2.3Gb downloads

Submitted by: NCBI (GEO)
Study: Long noncoding RNA INCA1 regulates tumor interferon signaling
show Abstracthide Abstract
Tumor interferon signaling regulates the expression of immunosuppressive molecules and promotes cancer immune evasion. Although the role of long noncoding RNAs (lncRNAs) in the regulation of gene expression is now emerging, their function in tumor interferon signaling remains unexplored. We have identified the interferon-? (IFN?)-stimulated non-coding RNA 1 (INCA1) as a novel lncRNA expressed form the PD-L1 locus. INCA1 is expressed in multiple tumor types and its levels increase after IFN? stimulation. In this study we performed transcriptome analysis (RNA-seq) of INCA1 knockdown cells and show that INCA1 regulates the expression of several interferon-stimulated genes. Overall, our findings reveal INCA1 as a critical component of the tumor interferon signaling. Overall design: Tumor cell lines stable expressing shRNA control or shRNA targeting INCA1 were stimulated with interferon gamma for 24 hours. RNA expression profiles were generated by RNA-seq, in triplicate, using Illumina NovaSeq6000.
Sample: shCTRL-C3
SAMN12752312 • SRS5389022 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was harvested from cells using RNeasy Mini Kit (Qiagen Cat#74104). Illumina TruSeq stranded mRNA Library Prep Kit was used with 1 ug of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols
Experiment attributes:
GEO Accession: GSM4079646
Links:
Runs: 1 run, 25M spots, 7.6G bases, 2.3Gb
Run# of Spots# of BasesSizePublished
SRR1012104325,017,9177.6G2.3Gb2020-07-29

ID:
9016318

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