GSM4054782: HFD 4; Mus musculus; RNA-Seq - SRA

SRX6779230: GSM4054782: HFD 4; Mus musculus; RNA-Seq
4 ILLUMINA (NextSeq 550) runs: 48M spots, 7.3G bases, 2.8Gb downloads

Submitted by: NCBI (GEO)

Study: Transcriptomic effect of high-fat diet and PCN treatment on mouse liver

PRJNA563006 • SRP219863 • All experiments • All runs

show Abstracthide Abstract

PCN, a selective murine PXR agonist, was administered to obese mice with the goal to investigate what transcriptional changes PXR activation cause in the livers of obese mice. Overall design: n=3/group. Groups: Chow, high-fat diet, high-fat diet + vehicle, high-fat diet + PCN

Sample: HFD 4

SAMN12661237 • SRS5326160 • All experiments • All runs

Organism: Mus musculus

Library:

Instrument: NextSeq 550

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Construction protocol: Liver pieces were lysed to RNAzol RT (Sigma-Aldrich) and total RNA was extracted per manufacturer's protocol. Samples were DNAse treated with Rnase-free Dnase set (Qiagen) cDNA libraries were prepared for sequencing using standard Illumina protocols

Experiment attributes:

GEO Accession: GSM4054782

Links:

NCBI link: NCBI Entrez (gds)

Runs: 4 runs, 48M spots, 7.3G bases, 2.8Gb

Run	# of Spots	# of Bases	Size	Published
SRR10044467	12,575,293	1.9G	766.3Mb	2021-08-07
SRR10044468	11,590,660	1.8G	708.4Mb	2021-08-07
SRR10044469	11,924,492	1.8G	725.7Mb	2021-08-07
SRR10044470	11,928,138	1.8G	714Mb	2021-08-07

ID:: 8928905

SRA

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