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SRX6749037: GSM4041654: 3-day-4T1; Mus musculus; miRNA-Seq
1 ILLUMINA (Illumina MiSeq) run: 2.9M spots, 186.3M bases, 68.8Mb downloads

Submitted by: NCBI (GEO)
Study: Circulating miR 802-5p and miR 194-5p and brain expression of MEF2C as novel biomarkers of breast cancer brain metastasis
show Abstracthide Abstract
We hypothesized that circulating miRNAs could work as biomarkers for early detection of breast cancer brain metastasis (BCBM), and their targets could constitute new targets for modulation. We used a mouse model of BCBM and Next-Generation Sequencing to establish the circulating miRNAs alterations along brain metastasis development and performed bioinformatics analysis to identify their targets with relevance in the metastatic process. We additionally analyzed human resected brain metastasis of breast cancer patients for target's expression validation. In our mouse model, we observed a deregulation of circulating miRNAs profile during BCBM progression, with a downregulation of miR-802-5p and miR-194-5p in plasma prior to brain metastases detection. The transcription factor myocyte enhancer factor 2C (MEF2C), was identified as a target for both miRNAs, and its expression was increasingly observed in malignant cells along brain metastasis development. Its upregulation was also observed in peritumoral astrocytes and in human BCBM. Collectively, downregulation of circulating miR-802-5p and miR-194-5p appear as precocious biomarkers for BCBM and MEF2C emerges as a new player and a potential target for modulation. Overall design: We used a mouse model of breast cancer brain metastasis (BCBM), relying on the innoculation of breast cancer cells (or vehicle; control) in the carotid artery of Balb/c mouse, as a reliable model of brain metastasization of breast cancer, and collected brain and plasma samples at different time points (3, 7 and 10 days). Brain metastasis development was profiled by histologic analysis of brain sections and alterations in the circulating miRNA signature were determined by Next-Generation Sequencing miRNA analysis of plasma samples. MiRNAs with an aberrant expression prior to brain metastasis detection were selected for further study. This included the validation of their altered expression by qPCR and the identification of their potential targets with relevance for the metastatic process by bioinformatics analayis. Finnally, the expression of the most promising target was determined by immunofluorescence analysis of brain sections along metastasis development and the data obtained in the mouse model was further validated by analysis of ressected brain metastasis from breast cancer patients.
Sample: GEO accession GSM4041654 is currently private and is scheduled to be released on Aug 01, 2020.
SAMN12617071 • SRS5299143 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina MiSeq
Strategy: miRNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: SINGLE
Construction protocol: 500ul of blood was collected from live mice under isofluorene anesthetic, collected with 40ul of the anticoagulant and spun down for 10mins @ 2000 RPM at 4°C to collect the plasma Libraries were prepared as per manufacturer using Illumina's TruSeq smallRNA kit with 15 cycles of PCR amplification performed. Desired product size of libraries (~146bp) were isolated using Sage Science's Blue Pippin machine on a 3% agarose gel and confirmed on Agilent's Bioanalyzer using a High Sensitivity DNA chip, followed by sequencing on Illumina's MiSeq using the MiSeq v3 reagent kit
Experiment attributes:
GEO Accession: GSM4041654
Links:
Runs: 1 run, 2.9M spots, 186.3M bases, 68.8Mb
Run# of Spots# of BasesSizePublished
SRR100108432,866,414186.3M68.8Mb2019-12-02

ID:
8890050

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