GSM1441327: H3K4me3_MF.ucsc; Mus musculus; ChIP-Seq - SRA

SRX658432: GSM1441327: H3K4me3_MF.ucsc; Mus musculus; ChIP-Seq
4 ILLUMINA (Illumina HiSeq 1500) runs: 33.8M spots, 2G bases, 898Mb downloads

Submitted by: Gene Expression Omnibus (GEO)

Study: Chromatin state dynamics during blood formation (ChIP-Seq)

PRJNA255796 • SRP044685 • All experiments • All runs

show Abstracthide Abstract

We develop a new ChIpseq method (iChIP) to profile chromatin states of low cell number samples. We use IChIP to profile the chromatin dynamics during hematopoiesis across 16 different cell types which include the principal hematopoietic progenitors Overall design: Examination of 2 different histone modifications in 2 cell types.

Sample: H3K4me3_MF.ucsc

SAMN02929076 • SRS663583 • All experiments • All runs

Organism: Mus musculus

Library:

Instrument: Illumina HiSeq 1500

Strategy: ChIP-Seq

Source: GENOMIC

Selection: ChIP

Layout: SINGLE

Construction protocol: Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. A new protocol (iChIP) was designed to perform iCHIP from small cell numbers

Experiment attributes:

GEO Accession: GSM1441327

Links:

External link: GEO Sample GSM1441327

NCBI link: NCBI Entrez (gds)

Runs: 4 runs, 33.8M spots, 2G bases, 898Mb

Run	# of Spots	# of Bases	Size	Published
SRR1521931	7,693,503	461.6M	207.3Mb	2014-08-08
SRR1521932	11,812,845	708.8M	315.8Mb	2014-08-08
SRR1521933	4,990,642	299.4M	131.4Mb	2014-08-08
SRR1521934	9,273,617	556.4M	243.5Mb	2014-08-08

ID:: 922872

SRA

Sequence Read Archive

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