U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX6183299: GSM3893122: 3T-R-2_June18: flox transformed cells variant#3 repl2 4-OHT; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 31.3M spots, 6.2G bases, 1.9Gb downloads

Submitted by: NCBI (GEO)
Study: Prevention of chromatin destabilization by FACT is crucial for malignant transformation [gene expression]
show Abstracthide Abstract
Histone chaperone FACT is commonly expressed and essential for the viability of transformed but not normal cells and its expression levels correlate with poor prognosis in cancer patients. FACT binds several components of nucleosomes and has been viewed as a factor destabilizing nucleosomes to facilitate RNA polymerase passage. To connect FACT's role in transcription with the viability of tumor cells, we analyzed genome-wide FACT binding to chromatin in conjunction with transcription in mouse and human cells with different degrees of FACT dependence. While genomic distribution and density of FACT correlated with the intensity of transcription, FACT knockout or knockdown was unexpectedly accompanied by the elevation, rather than suppression, of transcription and with the destabilization of chromatin. These data suggest that the real function of FACT is to stabilize and reassemble nucleosomes disturbed by transcription. This function is apparently vital for tumor cells because malignant transformation is accompanied by chromatin destabilization. Overall design: Mouse skin fibroblasts were isolated from tails of Ssrp1fl/fl;CreERT2+/+ mice. Primary cells were immortalized with p53 suppressive element GSE56 and transformed by GSE56+ HRasV12. To delete Ssrp1 cells were treated with hydroxytamoxifen for 5 days.
Sample: 3T-R-2_June18: flox transformed cells variant#3 repl2 4-OHT
SAMN12077145 • SRS4979510 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Monarch® Total RNA Miniprep Kit-T2010S KAPA RNA HyperPrep with RiboErase NovaSeq S1 100 PE
Experiment attributes:
GEO Accession: GSM3893122
Links:
Runs: 1 run, 31.3M spots, 6.2G bases, 1.9Gb
Run# of Spots# of BasesSizePublished
SRR941745331,258,5346.2G1.9Gb2019-06-26

ID:
8237746

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...