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SRX5818467: GSM3760273: Sample 54_LC53; Fusarium graminearum; RNA-Seq
1 ABI_SOLID (AB 5500xl Genetic Analyzer) run: 52.9M spots, 2.6G bases, 2Gb downloads

Submitted by: NCBI (GEO)
Study: Genetic dissection of gene silencing mediated by H3K27 methylation
show Abstracthide Abstract
We are intereted in changes in transcriptome in putative polycomb mutants generated by exposure to UV light. We included polycomb mutants made by reverse genetics and other WT strains with different genetic backgrounds used as parents for bulk segregant analysis. Overall design: RNA-seq for 68 samples, each from a different strain of Fusarium graminearum.
Sample: Sample 54_LC53
SAMN11619463 • SRS4747236 • All experiments • All runs
Library:
Instrument: AB 5500xl Genetic Analyzer
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA was assessed with Agilent 2100 Bioanalyzer to determine RNA integrity; only high quality total RNA (integrity number between 9 - 10) were used. An Ribo-Zero rRNA removal Kit (Epicentre, #MRZY1324) was used for enrichment of transcripts. For sample 1-60 The SOLiD total RNA-seq kit (ABI SOLiD, #4445374) was used to construct template cDNA. For sample 61-68 Illumina TruSeq RNA Sample Preparation kits were used to make RNA-seq libraries.
Experiment attributes:
GEO Accession: GSM3760273
Links:
Runs: 1 run, 52.9M spots, 2.6G bases, 2Gb
Run# of Spots# of BasesSizePublished
SRR904137152,946,3942.6G2Gb2020-01-02

ID:
7819521

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