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SRX535271: GSM1382277: RNA-seq Scr exp2, 3T3-L1 D0; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 1500) run: 13M spots, 585.1M bases, 335.7Mb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Molecular architecture of transcription factor hotspots in early adipogenesis
show Abstracthide Abstract
Here, we have used digital genomic footprinting to precisely define protein localization for several adipogenic transcription factors at a genome-wide level. In combination with ChIP-seq data, these analyses reveal novel molecular insight into the organization of transcription factors at hotpot regions, which provides a new framework for understanding transcription factor cooperativity on chromatin. Overall design: Digital genomic footprinting and gene expression in 3T3-L1 pre-adipocytes by high throughput sequencing.
Sample: RNA-seq Scr exp2, 3T3-L1 D0
SAMN02767372 • SRS603891 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 1500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Purified RNA was subjected to standard mRNA sample preparation for sequencing and sequenced on the Illumina platform according to the manufacturer’s instructions.
Experiment attributes:
GEO Accession: GSM1382277
Links:
External link:
Runs: 1 run, 13M spots, 585.1M bases, 335.7Mb
Run# of Spots# of BasesSizePublished
SRR127480513,001,841585.1M335.7Mb2014-05-09

ID:
764780

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