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SRX5318286: GSM3587125: 21d_Veh.H3K27ac_ChIPseq; Mus musculus; ChIP-Seq
1 ILLUMINA (NextSeq 500) run: 37M spots, 2.8G bases, 1,015.2Mb downloads

Submitted by: NCBI (GEO)
Study: A distal super enhancer mediates estrogen-dependent mouse uterine–specific gene transcription of Insulin-like growth factor 1 (Igf1)
show Abstracthide Abstract
Insulin-like growth factor 1 (IGF1) is primarily synthesized in and secreted from the liver; however, estrogen (E2), through E2 receptor a (ERa), increases uterine Igf1 mRNA levels. Previous ChIP-Seq analyses of the murine uterus have revealed a potential enhancer region distal from the Igf1 transcription start site (TSS) with multiple E2-dependent ERa-binding regions. Here, we show E2-dependent super enhancer–associated characteristics and suggest contact between the distal enhancer and the Igf1 TSS. We hypothesized that this distal super-enhancer region controls E2-responsive induction of uterine Igf1 transcripts. We deleted 430 bp, encompassing one of the ERa-binding sites, thereby disrupting interactions of the enhancer with gene-regulatory factors. As a result, E2-mediated induction of mouse uterine Igf1 mRNA is completely eliminated, whereas hepatic Igf1 expression remains unaffected. This highlights the central role of a distal enhancer in the assembly of the factors necessary for E2-dependent interaction with the Igf1 TSS and induction of uterus-specific Igf1 transcription. Of note, loss of the enhancer did not affect fertility or uterine growth responses. Deletion of uterine Igf1 in a PgrCre;Igf1f/f model decreased female fertility, but did not impact the E2-induced uterine growth response. Moreover, E2-dependent activation of uterine IGF1 signaling was not impaired by disrupting the distal enhancer or by deleting the coding transcript. This indicated a role for systemic IGF1, suggested that other growth mediators drive uterine response to E2, and that uterine-derived IGF1 is essential for reproductive success. Our findings elucidate the role of a super enhancer in Igf1 regulation and uterine growth. Overall design: ERa or Histone 3 modifications ChIP seq of pre-pubertal (21 days old) or ovariectomized adult uterine tissue treated for one hour with saline vehicle (V) or estradiol (E2); ERa ChIP seq of ovariectomized adult uterine tissue treated for 6, 8 or 12 hours with estradiol (E2); SMC1a ChIP seq or HiC of ovariectomized adult uterine tissue treated for one hour with saline vehicle (V) or estradiol (E2) or progesterone (P4); RNA seq of ovariectomized adult uterine tissue treated for two hours with saline vehicle (S) or for two, six or 24 hours with estradiol (E2)
Sample: 21d_Veh.H3K27ac_ChIPseq
SAMN10854686 • SRS4314133 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: NextSeq 500
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: SINGLE
Construction protocol: ChIP-seq: Frozen mouse tissue was submersed in PBS + 1% formaldehyde, cut into small pieces and incubated at room temperature for 15 minutes. Fixation was stopped by the addition of 0.125 M glycine (final). The tissue pieces were then treated with a TissueTearer and finally spun down and washed 2x in PBS. Chromatin was isolated by the addition of lysis buffer, followed by disruption with a Dounce homogenizer. Lysates were sonicated and the DNA sheared to an average length of 300-500 bp. ChIP-seq: Illumina sequencing libraries were prepared from the ChIP and Input DNAs by the standard consecutive enzymatic steps of end-polishing, dA-addition, and adaptor ligation.
Experiment attributes:
GEO Accession: GSM3587125
Links:
Runs: 1 run, 37M spots, 2.8G bases, 1,015.2Mb
Run# of Spots# of BasesSizePublished
SRR851467137,046,3282.8G1,015.2Mb2019-05-08

ID:
7193214

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