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SRX516122: GSM1367876: Cortical collecting duct, replicate #8; Rattus norvegicus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 20.1M spots, 2G bases, 1.1Gb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: RNA-seq profiling of microdissected rat renal tubule segments
show Abstracthide Abstract
We sequenced mRNAs from glomeruli and 14 different rat renal tubule segments collected by hand microdissection. Overall design: Collagenase-digested rat renal tubule segments were collected by hand microdissection. Poly(A)-mRNAs were captured from cell lysate and sequenced using paired-end protocol.
Sample: Cortical collecting duct, replicate #8
SAMN02726223 • SRS591620 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Dissected tubules were lysed in buffer containing RNase inhibitors and universal primers. Reverse transcription was started in this cell lysate. See Tang F. et al. (2010). "RNA-Seq analysis to capture the transcriptome landscape of a single cell" Nature Protocol 5(3):517-35. We followed an RNA-seq protocol developed for single-cell RNA-seq. See Tang F. et al. (2010). "RNA-Seq analysis to capture the transcriptome landscape of a single cell" Nature Protocol 5(3):517-35. cDNAs were sheared and made into adapter-ligated RNA-seq libraries using NuGen Mondrian machine and Ultralow Library System. We sequenced from both ends of a cDNA molecule, 50 nucleotides each.
Experiment attributes:
GEO Accession: GSM1367876
Links:
External link:
Runs: 1 run, 20.1M spots, 2G bases, 1.1Gb
Run# of Spots# of BasesSizePublished
SRR123606620,101,8092G1.1Gb2015-03-31

ID:
715769

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