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SRX4886150: GSM3428889: RNA_Tfh_rep1; Mus musculus; RNA-Seq
1 ILLUMINA (HiSeq X Ten) run: 32.9M spots, 9.9G bases, 2.9Gb downloads

Submitted by: NCBI (GEO)
Study: ZIKV infection induces robust Th1-like Tfh cell and long-term protective antibody responses in immunocompetent mice
show Abstracthide Abstract
Induction of long-lived antibody responses during infection or vaccination is often essential for subsequent protection, but the relative contributions of T follicular helper (Tfh) cells and T helper 1 (Th1) cells for induction of antigen specific antibody responses to viruses are unclear. Here, we establish an acute Zika virus (ZIKV) infection model in immunocompetent mice, and show that ZIKV infection elicits robust Th1-like Tfh cell and protective antibody responses. While these Th1-like Tfh cells share phenotypic and transcriptomic profiles with both Tfh and Th1 cells, they also have unique surface markers and gene expression characteristics, and are dependent on T-bet for their development. Th1-like Tfh cells, but not Th1 cells, are essential for class switching of ZIKV-specific IgG2c antibodies and maintenance of long-term neutralizing antibody responses. Our study suggests that specific modulation of the Th1-like Tfh cell response during infection or vaccination may augment the induction of antiviral antibody response to ZIKV and other viruses. Overall design: IFN-?-YFP reporter mice were infected by ZIKV with anti-IFNa/ß receptor blocking one day before. Spleens and dLNs were harvested 7 dpi to sort. For RNAseq, We have three samples, Tfh(IFN-?- Tfh), Th1-like Tfh(IFN-?+ Tfh), Th1 and 2 replicates for each sample.
Sample: RNA_Tfh_rep1
SAMN10241750 • SRS3933886 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: HiSeq X Ten
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Three populations from IFN-γ-YFP reporter mice were isolated by cell sorting (IFN-γ-Tfh: CD4+CD44hiCD62LlowCXCR5hiPD-1hiCXCR3-YFP- ,IFN-γ+Tfh: CD4+CD44hiCD62LlowCXCR5hiPD-1hiCXCR3+YFP+, Th1: CD4+CD44hiCD62LlowCXCR5-CXCR3+YFP+ ). Total RNA were extracted using Trizol(Thermo), and sequencing libraries were generated using NEBNext® Ultra™ RNA Library Prep Kit for Illumina® (NEB, USA) following manufacturer's recommendations and index codes were added to attribute sequences to each sample.
Experiment attributes:
GEO Accession: GSM3428889
Links:
Runs: 1 run, 32.9M spots, 9.9G bases, 2.9Gb
Run# of Spots# of BasesSizePublished
SRR805657232,919,4149.9G2.9Gb2019-05-02

ID:
6586589

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